Strain Fitness in Escherichia coli BL21 around ECD_01616

Experiment: K25

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01615 and ECD_01616 are separated by 0 nucleotidesECD_01616 and ECD_01617 are separated by 80 nucleotides ECD_01615: ECD_01615 - putative efflux protein (PET) component of YdhJK efflux pump, at 1,667,317 to 1,669,329 _01615 ECD_01616: ECD_01616 - superoxide dismutase, Cu, Zn, periplasmic, at 1,669,330 to 1,669,851 _01616 ECD_01617: ECD_01617 - putative oxidoreductase, at 1,669,932 to 1,670,828 _01617 Position (kb) 1669 1670Strain fitness (log2 ratio) -1 0 1at 1668.965 kb on - strand, within ECD_01615at 1669.396 kb on - strand, within ECD_01616at 1669.840 kb on - strandat 1670.165 kb on - strand, within ECD_01617at 1670.666 kb on - strand, within ECD_01617at 1670.817 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K25
remove
1,668,965 - ECD_01615 0.82 -1.4
1,669,396 - ECD_01616 0.13 +0.9
1,669,840 - -0.1
1,670,165 - ECD_01617 0.26 +0.2
1,670,666 - ECD_01617 0.82 +1.4
1,670,817 - +0.3

Or see this region's nucleotide sequence