Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00018 and ECD_00019 are separated by 59 nucleotides ECD_00019 and ECD_00020 are separated by 38 nucleotides
ECD_00018: ECD_00018 - sodium-proton antiporter, at 17,488 to 18,654
_00018
ECD_00019: ECD_00019 - transcriptional activator of nhaA, at 18,714 to 19,619
_00019
ECD_00020: ECD_00020 - hypothetical protein, at 19,658 to 20,617
_00020
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1 at 17.759 kb on + strand, within ECD_00018 at 17.836 kb on + strand, within ECD_00018 at 17.995 kb on - strand, within ECD_00018 at 18.015 kb on + strand, within ECD_00018 at 18.023 kb on + strand, within ECD_00018 at 18.112 kb on - strand, within ECD_00018 at 18.195 kb on + strand, within ECD_00018 at 18.728 kb on + strand at 18.736 kb on - strand at 18.751 kb on - strand at 18.765 kb on + strand at 18.765 kb on + strand at 18.805 kb on - strand, within ECD_00019 at 18.868 kb on + strand, within ECD_00019 at 18.872 kb on + strand, within ECD_00019 at 18.978 kb on + strand, within ECD_00019 at 18.978 kb on + strand, within ECD_00019 at 18.997 kb on + strand, within ECD_00019 at 18.998 kb on - strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.069 kb on + strand, within ECD_00019 at 19.132 kb on + strand, within ECD_00019 at 19.181 kb on + strand, within ECD_00019 at 19.182 kb on - strand, within ECD_00019 at 19.458 kb on + strand, within ECD_00019 at 19.654 kb on + strand at 19.660 kb on - strand at 19.660 kb on - strand at 19.715 kb on - strand at 19.722 kb on + strand at 19.959 kb on - strand, within ECD_00020 at 20.517 kb on - strand, within ECD_00020
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 17,759 + ECD_00018 0.23 -0.2 17,836 + ECD_00018 0.30 -0.6 17,995 - ECD_00018 0.43 -0.0 18,015 + ECD_00018 0.45 -0.5 18,023 + ECD_00018 0.46 -0.8 18,112 - ECD_00018 0.53 -0.5 18,195 + ECD_00018 0.61 -0.7 18,728 + +0.7 18,736 - -0.5 18,751 - -0.4 18,765 + +0.1 18,765 + -1.5 18,805 - ECD_00019 0.10 -0.6 18,868 + ECD_00019 0.17 +0.3 18,872 + ECD_00019 0.17 -0.4 18,978 + ECD_00019 0.29 -0.0 18,978 + ECD_00019 0.29 -0.3 18,997 + ECD_00019 0.31 -0.1 18,998 - ECD_00019 0.31 -1.4 19,051 + ECD_00019 0.37 -0.2 19,051 + ECD_00019 0.37 +0.7 19,051 + ECD_00019 0.37 -1.0 19,051 + ECD_00019 0.37 -1.2 19,069 + ECD_00019 0.39 -0.2 19,132 + ECD_00019 0.46 -0.8 19,181 + ECD_00019 0.52 +1.5 19,182 - ECD_00019 0.52 +0.6 19,458 + ECD_00019 0.82 +0.1 19,654 + +0.3 19,660 - +1.6 19,660 - -0.0 19,715 - +0.0 19,722 + -0.4 19,959 - ECD_00020 0.31 -0.5 20,517 - ECD_00020 0.89 -1.4
Or see this region's nucleotide sequence