Strain Fitness in Escherichia coli BL21 around ECD_04238

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04236 and ECD_04237 are separated by 253 nucleotidesECD_04237 and ECD_04238 are separated by 48 nucleotidesECD_04238 and ECD_04239 are separated by 2 nucleotidesECD_04239 and ECD_04240 are separated by 106 nucleotides ECD_04236: ECD_04236 - OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane-bound) and II (soluble), at 4,515,525 to 4,517,816 _04236 ECD_04237: ECD_04237 - putative DUF2501 family periplasmic protein, at 4,518,070 to 4,518,564 _04237 ECD_04238: ECD_04238 - DNA biosynthesis protein, at 4,518,613 to 4,519,350 _04238 ECD_04239: ECD_04239 - DNA biosynthesis protein (primosomal protein I), at 4,519,353 to 4,519,892 _04239 ECD_04240: ECD_04240 - DUF3815 family inner membrane protein, at 4,519,999 to 4,520,472 _04240 Position (kb) 4518 4519 4520Strain fitness (log2 ratio) -1 0 1 2at 4517.630 kb on + strandat 4517.632 kb on + strandat 4517.632 kb on + strandat 4517.632 kb on + strandat 4517.633 kb on - strandat 4517.669 kb on - strandat 4517.691 kb on - strandat 4517.691 kb on - strandat 4517.695 kb on - strandat 4517.695 kb on - strandat 4517.747 kb on + strandat 4517.747 kb on + strandat 4517.747 kb on + strandat 4517.747 kb on + strandat 4517.748 kb on - strandat 4517.768 kb on - strandat 4517.768 kb on - strandat 4517.806 kb on - strandat 4517.806 kb on - strandat 4517.832 kb on - strandat 4517.879 kb on + strandat 4517.880 kb on - strandat 4518.049 kb on + strandat 4518.215 kb on + strand, within ECD_04237at 4518.323 kb on + strand, within ECD_04237at 4518.354 kb on + strand, within ECD_04237at 4518.355 kb on - strand, within ECD_04237at 4518.355 kb on - strand, within ECD_04237at 4518.355 kb on - strand, within ECD_04237at 4518.364 kb on + strand, within ECD_04237at 4518.364 kb on + strand, within ECD_04237at 4518.394 kb on - strand, within ECD_04237at 4518.394 kb on - strand, within ECD_04237at 4518.394 kb on - strand, within ECD_04237at 4518.397 kb on + strand, within ECD_04237at 4518.398 kb on - strand, within ECD_04237at 4518.398 kb on - strand, within ECD_04237at 4518.512 kb on - strand, within ECD_04237at 4518.549 kb on + strandat 4518.593 kb on + strandat 4518.594 kb on - strandat 4518.614 kb on + strandat 4518.614 kb on + strandat 4518.615 kb on - strandat 4519.942 kb on - strandat 4519.945 kb on - strandat 4520.029 kb on + strandat 4520.029 kb on + strandat 4520.163 kb on + strand, within ECD_04240at 4520.166 kb on - strand, within ECD_04240at 4520.166 kb on - strand, within ECD_04240at 4520.251 kb on - strand, within ECD_04240at 4520.271 kb on + strand, within ECD_04240at 4520.271 kb on + strand, within ECD_04240at 4520.272 kb on - strand, within ECD_04240at 4520.272 kb on - strand, within ECD_04240at 4520.272 kb on - strand, within ECD_04240at 4520.272 kb on - strand, within ECD_04240at 4520.281 kb on - strand, within ECD_04240at 4520.341 kb on + strand, within ECD_04240

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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4,517,630 + -0.9
4,517,632 + +0.9
4,517,632 + -0.1
4,517,632 + +0.4
4,517,633 - -0.7
4,517,669 - +0.7
4,517,691 - +0.2
4,517,691 - -0.3
4,517,695 - -1.3
4,517,695 - -0.3
4,517,747 + +0.8
4,517,747 + +0.4
4,517,747 + -0.1
4,517,747 + -0.1
4,517,748 - +0.0
4,517,768 - -0.0
4,517,768 - +0.6
4,517,806 - -0.3
4,517,806 - -1.5
4,517,832 - -0.9
4,517,879 + +1.4
4,517,880 - +0.4
4,518,049 + -0.1
4,518,215 + ECD_04237 0.29 -0.5
4,518,323 + ECD_04237 0.51 +0.0
4,518,354 + ECD_04237 0.57 -0.6
4,518,355 - ECD_04237 0.58 +0.1
4,518,355 - ECD_04237 0.58 -0.9
4,518,355 - ECD_04237 0.58 +0.1
4,518,364 + ECD_04237 0.59 +1.8
4,518,364 + ECD_04237 0.59 -0.6
4,518,394 - ECD_04237 0.65 +0.1
4,518,394 - ECD_04237 0.65 +0.0
4,518,394 - ECD_04237 0.65 +0.7
4,518,397 + ECD_04237 0.66 +0.5
4,518,398 - ECD_04237 0.66 +0.2
4,518,398 - ECD_04237 0.66 +0.1
4,518,512 - ECD_04237 0.89 -0.1
4,518,549 + +1.4
4,518,593 + -0.2
4,518,594 - +2.1
4,518,614 + -0.1
4,518,614 + +1.0
4,518,615 - +0.1
4,519,942 - +0.4
4,519,945 - -0.6
4,520,029 + -0.1
4,520,029 + -0.6
4,520,163 + ECD_04240 0.35 -1.3
4,520,166 - ECD_04240 0.35 +1.3
4,520,166 - ECD_04240 0.35 +0.8
4,520,251 - ECD_04240 0.53 +0.6
4,520,271 + ECD_04240 0.57 +0.3
4,520,271 + ECD_04240 0.57 +0.1
4,520,272 - ECD_04240 0.58 -1.5
4,520,272 - ECD_04240 0.58 -0.5
4,520,272 - ECD_04240 0.58 +0.3
4,520,272 - ECD_04240 0.58 -0.0
4,520,281 - ECD_04240 0.59 -0.2
4,520,341 + ECD_04240 0.72 -0.1

Or see this region's nucleotide sequence