Strain Fitness in Escherichia coli BL21 around ECD_04176

Experiment: K25

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04176 and ECD_04177 are separated by 64 nucleotides ECD_04176: ECD_04176 - 9-O-acetyl N-acetylneuraminic acid esterase, at 4,445,117 to 4,446,097 _04176 ECD_04177: ECD_04177 - N-acetylneuraminic acid mutarotase, at 4,446,162 to 4,447,268 _04177 Position (kb) 4445 4446 4447Strain fitness (log2 ratio) -2 -1 0 1at 4444.219 kb on + strandat 4444.439 kb on + strandat 4444.439 kb on + strandat 4444.504 kb on - strandat 4444.505 kb on + strandat 4444.505 kb on + strandat 4444.555 kb on + strandat 4444.576 kb on - strandat 4444.730 kb on - strandat 4444.802 kb on + strandat 4444.871 kb on + strandat 4444.919 kb on - strandat 4444.922 kb on - strandat 4444.997 kb on - strandat 4444.999 kb on - strandat 4445.040 kb on - strandat 4445.071 kb on + strandat 4445.250 kb on + strand, within ECD_04176at 4445.264 kb on + strand, within ECD_04176at 4445.265 kb on - strand, within ECD_04176at 4445.382 kb on + strand, within ECD_04176at 4445.452 kb on + strand, within ECD_04176at 4445.453 kb on - strand, within ECD_04176at 4445.456 kb on - strand, within ECD_04176at 4445.478 kb on - strand, within ECD_04176at 4445.503 kb on + strand, within ECD_04176at 4445.630 kb on + strand, within ECD_04176at 4445.700 kb on + strand, within ECD_04176at 4445.700 kb on + strand, within ECD_04176at 4445.701 kb on - strand, within ECD_04176at 4445.804 kb on - strand, within ECD_04176at 4445.830 kb on - strand, within ECD_04176at 4445.911 kb on + strand, within ECD_04176at 4445.911 kb on + strand, within ECD_04176at 4445.911 kb on + strand, within ECD_04176at 4445.912 kb on - strand, within ECD_04176at 4445.966 kb on + strand, within ECD_04176at 4445.974 kb on + strand, within ECD_04176at 4446.041 kb on - strandat 4446.070 kb on - strandat 4446.087 kb on - strandat 4446.260 kb on + strandat 4446.261 kb on - strandat 4446.280 kb on - strand, within ECD_04177at 4446.386 kb on - strand, within ECD_04177at 4446.516 kb on - strand, within ECD_04177at 4446.762 kb on - strand, within ECD_04177at 4446.847 kb on + strand, within ECD_04177at 4446.848 kb on - strand, within ECD_04177at 4446.940 kb on + strand, within ECD_04177at 4446.941 kb on - strand, within ECD_04177at 4446.949 kb on - strand, within ECD_04177at 4447.022 kb on + strand, within ECD_04177

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K25
remove
4,444,219 + +0.4
4,444,439 + +0.0
4,444,439 + +0.0
4,444,504 - -0.8
4,444,505 + +0.2
4,444,505 + -0.6
4,444,555 + +0.4
4,444,576 - -0.5
4,444,730 - +0.3
4,444,802 + -0.9
4,444,871 + -0.1
4,444,919 - +1.6
4,444,922 - -0.5
4,444,997 - -0.1
4,444,999 - -0.5
4,445,040 - -0.3
4,445,071 + +0.1
4,445,250 + ECD_04176 0.14 -0.6
4,445,264 + ECD_04176 0.15 +0.4
4,445,265 - ECD_04176 0.15 +0.1
4,445,382 + ECD_04176 0.27 +0.3
4,445,452 + ECD_04176 0.34 -0.1
4,445,453 - ECD_04176 0.34 +0.7
4,445,456 - ECD_04176 0.35 -0.3
4,445,478 - ECD_04176 0.37 -1.3
4,445,503 + ECD_04176 0.39 -0.1
4,445,630 + ECD_04176 0.52 -0.5
4,445,700 + ECD_04176 0.59 +0.2
4,445,700 + ECD_04176 0.59 -0.6
4,445,701 - ECD_04176 0.60 -1.7
4,445,804 - ECD_04176 0.70 +0.8
4,445,830 - ECD_04176 0.73 -0.6
4,445,911 + ECD_04176 0.81 +0.3
4,445,911 + ECD_04176 0.81 -0.2
4,445,911 + ECD_04176 0.81 -0.2
4,445,912 - ECD_04176 0.81 -0.1
4,445,966 + ECD_04176 0.87 -0.1
4,445,974 + ECD_04176 0.87 +0.7
4,446,041 - +0.9
4,446,070 - -0.5
4,446,087 - -1.2
4,446,260 + -2.3
4,446,261 - +1.3
4,446,280 - ECD_04177 0.11 +0.4
4,446,386 - ECD_04177 0.20 +0.5
4,446,516 - ECD_04177 0.32 -0.0
4,446,762 - ECD_04177 0.54 -0.1
4,446,847 + ECD_04177 0.62 -1.1
4,446,848 - ECD_04177 0.62 +0.3
4,446,940 + ECD_04177 0.70 +0.2
4,446,941 - ECD_04177 0.70 -0.1
4,446,949 - ECD_04177 0.71 +0.0
4,447,022 + ECD_04177 0.78 -0.7

Or see this region's nucleotide sequence