Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04013 and ECD_04014 are separated by 137 nucleotides ECD_04014 and ECD_04015 are separated by 192 nucleotides ECD_04015 and ECD_04016 are separated by 394 nucleotides
ECD_04013: ECD_04013 - Cpn60 chaperonin GroEL, large subunit of GroESL, at 4,278,111 to 4,279,757
_04013
ECD_04014: ECD_04014 - DUF4156 family lipoprotein, at 4,279,895 to 4,280,248
_04014
ECD_04015: ECD_04015 - uncharacterized protein, at 4,280,441 to 4,281,310
_04015
ECD_04016: ECD_04016 - EF-P-Lys34 lysylation protein; weak lysine 2,3-aminomutase, at 4,281,705 to 4,282,733
_04016
Position (kb)
4280
4281
4282 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4279.755 kb on + strand at 4279.756 kb on - strand at 4279.892 kb on - strand at 4279.902 kb on + strand at 4279.903 kb on - strand at 4279.907 kb on + strand at 4279.908 kb on - strand at 4279.936 kb on - strand, within ECD_04014 at 4279.951 kb on + strand, within ECD_04014 at 4279.952 kb on - strand, within ECD_04014 at 4279.989 kb on + strand, within ECD_04014 at 4279.989 kb on + strand, within ECD_04014 at 4279.990 kb on - strand, within ECD_04014 at 4280.035 kb on + strand, within ECD_04014 at 4280.047 kb on + strand, within ECD_04014 at 4280.048 kb on - strand, within ECD_04014 at 4280.095 kb on + strand, within ECD_04014 at 4280.231 kb on + strand at 4280.233 kb on + strand at 4280.233 kb on + strand at 4280.233 kb on + strand at 4280.234 kb on - strand at 4280.266 kb on + strand at 4280.266 kb on + strand at 4280.266 kb on + strand at 4280.269 kb on - strand at 4280.300 kb on - strand at 4280.300 kb on - strand at 4280.301 kb on + strand at 4280.302 kb on - strand at 4280.302 kb on - strand at 4280.302 kb on - strand at 4280.428 kb on - strand at 4280.483 kb on + strand at 4280.483 kb on + strand at 4280.483 kb on + strand at 4280.484 kb on - strand at 4280.556 kb on + strand, within ECD_04015 at 4280.556 kb on + strand, within ECD_04015 at 4280.630 kb on + strand, within ECD_04015 at 4280.812 kb on - strand, within ECD_04015 at 4280.814 kb on - strand, within ECD_04015 at 4281.137 kb on - strand, within ECD_04015 at 4281.388 kb on - strand at 4281.464 kb on + strand at 4281.554 kb on + strand at 4281.554 kb on + strand at 4281.646 kb on - strand at 4281.706 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 4,279,755 + +0.3 4,279,756 - -0.1 4,279,892 - +0.2 4,279,902 + +0.9 4,279,903 - +1.0 4,279,907 + -0.2 4,279,908 - +0.5 4,279,936 - ECD_04014 0.12 -1.2 4,279,951 + ECD_04014 0.16 -0.0 4,279,952 - ECD_04014 0.16 -0.7 4,279,989 + ECD_04014 0.27 +0.5 4,279,989 + ECD_04014 0.27 +0.8 4,279,990 - ECD_04014 0.27 +1.7 4,280,035 + ECD_04014 0.40 -0.4 4,280,047 + ECD_04014 0.43 +0.2 4,280,048 - ECD_04014 0.43 +1.9 4,280,095 + ECD_04014 0.56 +0.2 4,280,231 + -0.0 4,280,233 + -0.3 4,280,233 + -0.2 4,280,233 + +0.4 4,280,234 - +1.2 4,280,266 + +0.2 4,280,266 + +0.5 4,280,266 + -0.3 4,280,269 - -0.3 4,280,300 - -0.0 4,280,300 - +0.5 4,280,301 + -0.4 4,280,302 - +1.1 4,280,302 - -0.1 4,280,302 - +0.8 4,280,428 - +1.0 4,280,483 + -1.3 4,280,483 + -0.8 4,280,483 + +0.3 4,280,484 - -1.8 4,280,556 + ECD_04015 0.13 +0.4 4,280,556 + ECD_04015 0.13 +0.7 4,280,630 + ECD_04015 0.22 +0.4 4,280,812 - ECD_04015 0.43 +0.5 4,280,814 - ECD_04015 0.43 -0.1 4,281,137 - ECD_04015 0.80 +1.3 4,281,388 - -0.6 4,281,464 + +0.4 4,281,554 + +0.9 4,281,554 + +0.1 4,281,646 - -0.8 4,281,706 + -0.2
Or see this region's nucleotide sequence