Strain Fitness in Escherichia coli BL21 around ECD_03296

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03294 and ECD_03295 are separated by 449 nucleotidesECD_03295 and ECD_03296 are separated by 37 nucleotidesECD_03296 and ECD_03297 are separated by 119 nucleotidesECD_03297 and ECD_03298 overlap by 14 nucleotides ECD_03294: ECD_03294 - hypothetical protein, at 3,446,190 to 3,446,681 _03294 ECD_03295: ECD_03295 - stable heat shock chaperone, at 3,447,131 to 3,447,415 _03295 ECD_03296: ECD_03296 - gamma-glutamyltranspeptidase, at 3,447,453 to 3,449,195 _03296 ECD_03297: ECD_03297 - DUF2756 family protein, at 3,449,315 to 3,449,755 _03297 ECD_03298: ECD_03298 - glycerophosphodiester phosphodiesterase, cytosolic, at 3,449,742 to 3,450,485 _03298 Position (kb) 3447 3448 3449 3450Strain fitness (log2 ratio) -3 -2 -1 0 1at 3447.202 kb on + strand, within ECD_03295at 3447.203 kb on - strand, within ECD_03295at 3447.207 kb on + strand, within ECD_03295at 3447.234 kb on - strand, within ECD_03295at 3447.307 kb on + strand, within ECD_03295at 3447.380 kb on + strand, within ECD_03295at 3447.421 kb on + strandat 3447.454 kb on + strandat 3447.539 kb on + strandat 3447.600 kb on - strandat 3447.776 kb on + strand, within ECD_03296at 3447.912 kb on - strand, within ECD_03296at 3447.914 kb on + strand, within ECD_03296at 3447.914 kb on + strand, within ECD_03296at 3447.971 kb on + strand, within ECD_03296at 3447.971 kb on + strand, within ECD_03296at 3447.973 kb on + strand, within ECD_03296at 3448.015 kb on + strand, within ECD_03296at 3448.023 kb on - strand, within ECD_03296at 3448.032 kb on - strand, within ECD_03296at 3448.032 kb on - strand, within ECD_03296at 3448.128 kb on - strand, within ECD_03296at 3448.177 kb on + strand, within ECD_03296at 3448.202 kb on - strand, within ECD_03296at 3448.293 kb on + strand, within ECD_03296at 3448.294 kb on - strand, within ECD_03296at 3448.334 kb on - strand, within ECD_03296at 3448.386 kb on - strand, within ECD_03296at 3448.466 kb on + strand, within ECD_03296at 3448.468 kb on + strand, within ECD_03296at 3448.468 kb on + strand, within ECD_03296at 3448.468 kb on + strand, within ECD_03296at 3448.580 kb on + strand, within ECD_03296at 3448.580 kb on + strand, within ECD_03296at 3448.616 kb on - strand, within ECD_03296at 3448.616 kb on - strand, within ECD_03296at 3448.714 kb on + strand, within ECD_03296at 3448.715 kb on - strand, within ECD_03296at 3448.715 kb on - strand, within ECD_03296at 3448.718 kb on + strand, within ECD_03296at 3448.719 kb on - strand, within ECD_03296at 3448.823 kb on + strand, within ECD_03296at 3449.046 kb on + strandat 3449.047 kb on - strandat 3449.095 kb on + strandat 3449.095 kb on + strandat 3449.096 kb on - strandat 3449.230 kb on + strandat 3449.230 kb on + strandat 3449.230 kb on + strandat 3449.231 kb on - strandat 3449.239 kb on + strandat 3449.241 kb on + strandat 3449.241 kb on + strandat 3449.241 kb on + strandat 3449.241 kb on + strandat 3449.241 kb on + strandat 3449.242 kb on - strandat 3449.242 kb on - strandat 3449.243 kb on + strandat 3449.243 kb on + strandat 3449.244 kb on - strandat 3449.244 kb on - strandat 3449.244 kb on - strandat 3449.244 kb on - strandat 3449.254 kb on + strandat 3449.254 kb on + strandat 3449.310 kb on - strandat 3449.374 kb on + strand, within ECD_03297at 3449.375 kb on - strand, within ECD_03297at 3449.375 kb on - strand, within ECD_03297at 3449.377 kb on + strand, within ECD_03297at 3449.533 kb on - strand, within ECD_03297at 3449.539 kb on + strand, within ECD_03297at 3449.540 kb on - strand, within ECD_03297at 3449.540 kb on - strand, within ECD_03297at 3449.648 kb on - strand, within ECD_03297at 3449.668 kb on + strand, within ECD_03297at 3449.668 kb on + strand, within ECD_03297at 3449.668 kb on + strand, within ECD_03297at 3449.669 kb on - strand, within ECD_03297at 3449.669 kb on - strand, within ECD_03297at 3449.786 kb on + strandat 3449.846 kb on + strand, within ECD_03298at 3449.849 kb on - strand, within ECD_03298at 3449.849 kb on - strand, within ECD_03298at 3449.909 kb on + strand, within ECD_03298at 3449.909 kb on + strand, within ECD_03298at 3449.909 kb on + strand, within ECD_03298at 3449.909 kb on + strand, within ECD_03298at 3449.910 kb on - strand, within ECD_03298at 3449.910 kb on - strand, within ECD_03298at 3449.910 kb on - strand, within ECD_03298at 3449.924 kb on + strand, within ECD_03298at 3449.924 kb on + strand, within ECD_03298at 3450.069 kb on - strand, within ECD_03298

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,447,202 + ECD_03295 0.25 -0.2
3,447,203 - ECD_03295 0.25 -0.8
3,447,207 + ECD_03295 0.27 +0.5
3,447,234 - ECD_03295 0.36 -0.3
3,447,307 + ECD_03295 0.62 -0.0
3,447,380 + ECD_03295 0.87 -2.8
3,447,421 + +0.3
3,447,454 + +1.0
3,447,539 + -0.8
3,447,600 - -1.3
3,447,776 + ECD_03296 0.19 +0.1
3,447,912 - ECD_03296 0.26 +1.1
3,447,914 + ECD_03296 0.26 -0.1
3,447,914 + ECD_03296 0.26 +0.4
3,447,971 + ECD_03296 0.30 +0.2
3,447,971 + ECD_03296 0.30 +0.1
3,447,973 + ECD_03296 0.30 +0.0
3,448,015 + ECD_03296 0.32 -0.1
3,448,023 - ECD_03296 0.33 +0.2
3,448,032 - ECD_03296 0.33 -0.2
3,448,032 - ECD_03296 0.33 +0.5
3,448,128 - ECD_03296 0.39 -0.6
3,448,177 + ECD_03296 0.42 -0.1
3,448,202 - ECD_03296 0.43 -0.8
3,448,293 + ECD_03296 0.48 -0.1
3,448,294 - ECD_03296 0.48 -0.1
3,448,334 - ECD_03296 0.51 +0.0
3,448,386 - ECD_03296 0.54 -0.0
3,448,466 + ECD_03296 0.58 +1.1
3,448,468 + ECD_03296 0.58 +0.1
3,448,468 + ECD_03296 0.58 +0.2
3,448,468 + ECD_03296 0.58 -0.1
3,448,580 + ECD_03296 0.65 -0.5
3,448,580 + ECD_03296 0.65 +0.0
3,448,616 - ECD_03296 0.67 -0.4
3,448,616 - ECD_03296 0.67 -0.1
3,448,714 + ECD_03296 0.72 +0.0
3,448,715 - ECD_03296 0.72 -0.3
3,448,715 - ECD_03296 0.72 -1.0
3,448,718 + ECD_03296 0.73 -0.1
3,448,719 - ECD_03296 0.73 +0.9
3,448,823 + ECD_03296 0.79 -0.2
3,449,046 + -2.1
3,449,047 - +0.3
3,449,095 + +0.7
3,449,095 + +0.3
3,449,096 - +0.1
3,449,230 + -0.6
3,449,230 + -0.2
3,449,230 + +0.5
3,449,231 - +0.0
3,449,239 + +0.2
3,449,241 + +0.5
3,449,241 + +0.0
3,449,241 + +0.8
3,449,241 + +0.2
3,449,241 + +0.4
3,449,242 - +0.3
3,449,242 - -0.6
3,449,243 + +0.1
3,449,243 + +0.4
3,449,244 - -2.0
3,449,244 - +0.3
3,449,244 - +0.6
3,449,244 - +1.0
3,449,254 + -0.1
3,449,254 + +1.1
3,449,310 - +0.8
3,449,374 + ECD_03297 0.13 -0.7
3,449,375 - ECD_03297 0.14 +0.3
3,449,375 - ECD_03297 0.14 -0.1
3,449,377 + ECD_03297 0.14 -0.1
3,449,533 - ECD_03297 0.49 +0.4
3,449,539 + ECD_03297 0.51 -0.4
3,449,540 - ECD_03297 0.51 -0.1
3,449,540 - ECD_03297 0.51 -1.3
3,449,648 - ECD_03297 0.76 +0.2
3,449,668 + ECD_03297 0.80 +0.6
3,449,668 + ECD_03297 0.80 -0.3
3,449,668 + ECD_03297 0.80 -1.9
3,449,669 - ECD_03297 0.80 -0.5
3,449,669 - ECD_03297 0.80 -0.6
3,449,786 + -1.1
3,449,846 + ECD_03298 0.14 -0.1
3,449,849 - ECD_03298 0.14 -0.6
3,449,849 - ECD_03298 0.14 +0.4
3,449,909 + ECD_03298 0.22 -1.1
3,449,909 + ECD_03298 0.22 -0.5
3,449,909 + ECD_03298 0.22 -0.1
3,449,909 + ECD_03298 0.22 +1.3
3,449,910 - ECD_03298 0.23 -0.7
3,449,910 - ECD_03298 0.23 +0.3
3,449,910 - ECD_03298 0.23 -0.1
3,449,924 + ECD_03298 0.24 -0.3
3,449,924 + ECD_03298 0.24 +0.0
3,450,069 - ECD_03298 0.44 -0.8

Or see this region's nucleotide sequence