Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03124 and ECD_03125 are separated by 252 nucleotides ECD_03125 and ECD_03126 are separated by 538 nucleotides
ECD_03124: ECD_03124 - multidrug efflux system protein, at 3,276,189 to 3,279,293
_03124
ECD_03125: ECD_03125 - putative outer membrane protein, at 3,279,546 to 3,279,767
_03125
ECD_03126: ECD_03126 - putative amino-acid transporter subunit, at 3,280,306 to 3,281,223
_03126
Position (kb)
3279
3280 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3278.553 kb on + strand, within ECD_03124 at 3278.616 kb on + strand, within ECD_03124 at 3278.616 kb on + strand, within ECD_03124 at 3278.616 kb on + strand, within ECD_03124 at 3278.616 kb on + strand, within ECD_03124 at 3278.617 kb on - strand, within ECD_03124 at 3278.617 kb on - strand, within ECD_03124 at 3278.617 kb on - strand, within ECD_03124 at 3278.768 kb on + strand, within ECD_03124 at 3278.859 kb on + strand, within ECD_03124 at 3278.860 kb on - strand, within ECD_03124 at 3278.888 kb on + strand, within ECD_03124 at 3278.961 kb on + strand, within ECD_03124 at 3278.962 kb on - strand, within ECD_03124 at 3278.962 kb on - strand, within ECD_03124 at 3279.088 kb on + strand at 3279.088 kb on + strand at 3279.089 kb on - strand at 3279.089 kb on - strand at 3279.089 kb on - strand at 3279.092 kb on + strand at 3279.092 kb on + strand at 3279.092 kb on + strand at 3279.092 kb on + strand at 3279.092 kb on + strand at 3279.093 kb on - strand at 3279.093 kb on - strand at 3279.093 kb on - strand at 3279.093 kb on - strand at 3279.131 kb on + strand at 3279.156 kb on - strand at 3279.497 kb on + strand at 3279.506 kb on + strand at 3279.663 kb on - strand, within ECD_03125 at 3279.811 kb on - strand at 3279.817 kb on - strand at 3279.821 kb on - strand at 3279.850 kb on + strand at 3279.866 kb on + strand at 3280.142 kb on + strand at 3280.165 kb on + strand at 3280.168 kb on - strand at 3280.197 kb on + strand at 3280.386 kb on + strand at 3280.438 kb on + strand, within ECD_03126 at 3280.506 kb on + strand, within ECD_03126 at 3280.555 kb on - strand, within ECD_03126 at 3280.567 kb on + strand, within ECD_03126 at 3280.610 kb on + strand, within ECD_03126 at 3280.704 kb on + strand, within ECD_03126 at 3280.711 kb on + strand, within ECD_03126 at 3280.711 kb on + strand, within ECD_03126 at 3280.711 kb on + strand, within ECD_03126
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 3,278,553 + ECD_03124 0.76 -1.5 3,278,616 + ECD_03124 0.78 -0.1 3,278,616 + ECD_03124 0.78 +0.6 3,278,616 + ECD_03124 0.78 -2.8 3,278,616 + ECD_03124 0.78 +0.3 3,278,617 - ECD_03124 0.78 +0.2 3,278,617 - ECD_03124 0.78 +0.3 3,278,617 - ECD_03124 0.78 +0.8 3,278,768 + ECD_03124 0.83 +0.3 3,278,859 + ECD_03124 0.86 -0.5 3,278,860 - ECD_03124 0.86 +1.1 3,278,888 + ECD_03124 0.87 -0.0 3,278,961 + ECD_03124 0.89 -0.1 3,278,962 - ECD_03124 0.89 -0.3 3,278,962 - ECD_03124 0.89 -0.9 3,279,088 + +1.0 3,279,088 + +0.4 3,279,089 - -0.2 3,279,089 - -0.3 3,279,089 - +0.4 3,279,092 + +0.7 3,279,092 + -0.5 3,279,092 + -0.7 3,279,092 + +0.5 3,279,092 + -0.7 3,279,093 - +1.1 3,279,093 - +0.4 3,279,093 - +0.9 3,279,093 - +0.3 3,279,131 + +2.3 3,279,156 - +1.3 3,279,497 + +0.4 3,279,506 + -0.1 3,279,663 - ECD_03125 0.53 +0.6 3,279,811 - -0.6 3,279,817 - +0.6 3,279,821 - -1.2 3,279,850 + -0.1 3,279,866 + -0.5 3,280,142 + +0.4 3,280,165 + +1.0 3,280,168 - +0.3 3,280,197 + -1.0 3,280,386 + -0.3 3,280,438 + ECD_03126 0.14 -0.4 3,280,506 + ECD_03126 0.22 -0.7 3,280,555 - ECD_03126 0.27 -0.3 3,280,567 + ECD_03126 0.28 +0.2 3,280,610 + ECD_03126 0.33 +0.6 3,280,704 + ECD_03126 0.43 +1.4 3,280,711 + ECD_03126 0.44 +0.3 3,280,711 + ECD_03126 0.44 -0.2 3,280,711 + ECD_03126 0.44 -0.6
Or see this region's nucleotide sequence