Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03116 and ECD_03117 are separated by 11 nucleotides ECD_03117 and ECD_03118 are separated by 328 nucleotides
ECD_03116: ECD_03116 - pantothenate:sodium symporter, at 3,268,763 to 3,270,214
_03116
ECD_03117: ECD_03117 - methyltransferase for 50S ribosomal subunit protein L11, at 3,270,226 to 3,271,107
_03117
ECD_03118: ECD_03118 - tRNA-dihydrouridine synthase B, at 3,271,436 to 3,272,401
_03118
Position (kb)
3270
3271
3272 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3269.274 kb on + strand, within ECD_03116 at 3269.274 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.278 kb on + strand, within ECD_03116 at 3269.278 kb on + strand, within ECD_03116 at 3269.363 kb on - strand, within ECD_03116 at 3269.371 kb on - strand, within ECD_03116 at 3269.373 kb on + strand, within ECD_03116 at 3269.373 kb on + strand, within ECD_03116 at 3269.374 kb on - strand, within ECD_03116 at 3269.403 kb on + strand, within ECD_03116 at 3269.458 kb on + strand, within ECD_03116 at 3269.459 kb on - strand, within ECD_03116 at 3269.476 kb on + strand, within ECD_03116 at 3269.477 kb on - strand, within ECD_03116 at 3269.549 kb on + strand, within ECD_03116 at 3269.549 kb on + strand, within ECD_03116 at 3269.641 kb on - strand, within ECD_03116 at 3269.771 kb on - strand, within ECD_03116 at 3269.881 kb on + strand, within ECD_03116 at 3269.881 kb on + strand, within ECD_03116 at 3269.881 kb on + strand, within ECD_03116 at 3269.882 kb on - strand, within ECD_03116 at 3269.882 kb on - strand, within ECD_03116 at 3269.886 kb on + strand, within ECD_03116 at 3269.886 kb on + strand, within ECD_03116 at 3269.887 kb on - strand, within ECD_03116 at 3270.009 kb on - strand, within ECD_03116 at 3270.040 kb on - strand, within ECD_03116 at 3270.069 kb on - strand at 3270.075 kb on + strand at 3270.115 kb on + strand at 3270.133 kb on - strand at 3270.133 kb on - strand at 3270.133 kb on - strand at 3270.172 kb on + strand at 3270.202 kb on + strand at 3270.208 kb on + strand at 3270.212 kb on + strand at 3270.495 kb on - strand, within ECD_03117 at 3270.617 kb on + strand, within ECD_03117 at 3270.618 kb on - strand, within ECD_03117 at 3270.789 kb on + strand, within ECD_03117 at 3270.823 kb on - strand, within ECD_03117 at 3270.862 kb on + strand, within ECD_03117 at 3270.862 kb on + strand, within ECD_03117 at 3270.863 kb on - strand, within ECD_03117 at 3270.863 kb on - strand, within ECD_03117 at 3270.932 kb on + strand, within ECD_03117 at 3270.933 kb on - strand, within ECD_03117 at 3271.033 kb on + strand at 3271.099 kb on - strand at 3271.105 kb on + strand at 3271.105 kb on + strand at 3271.279 kb on + strand at 3271.301 kb on + strand at 3271.320 kb on + strand at 3271.392 kb on - strand at 3271.394 kb on + strand at 3271.396 kb on + strand at 3271.396 kb on + strand at 3271.417 kb on + strand at 3271.417 kb on + strand at 3271.417 kb on + strand at 3271.417 kb on + strand at 3271.418 kb on - strand at 3271.418 kb on - strand at 3271.430 kb on + strand at 3271.430 kb on + strand at 3271.451 kb on + strand at 3271.451 kb on + strand at 3271.452 kb on - strand at 3271.567 kb on + strand, within ECD_03118 at 3271.687 kb on + strand, within ECD_03118 at 3271.688 kb on - strand, within ECD_03118 at 3271.882 kb on + strand, within ECD_03118 at 3271.982 kb on + strand, within ECD_03118 at 3271.990 kb on + strand, within ECD_03118 at 3271.990 kb on + strand, within ECD_03118 at 3272.078 kb on + strand, within ECD_03118 at 3272.080 kb on + strand, within ECD_03118 at 3272.080 kb on + strand, within ECD_03118 at 3272.080 kb on + strand, within ECD_03118 at 3272.103 kb on + strand, within ECD_03118
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 3,269,274 + ECD_03116 0.35 +0.0 3,269,274 + ECD_03116 0.35 +2.0 3,269,276 + ECD_03116 0.35 +0.0 3,269,276 + ECD_03116 0.35 -0.4 3,269,276 + ECD_03116 0.35 +0.4 3,269,276 + ECD_03116 0.35 -0.6 3,269,276 + ECD_03116 0.35 -1.0 3,269,276 + ECD_03116 0.35 -0.6 3,269,278 + ECD_03116 0.35 -0.7 3,269,278 + ECD_03116 0.35 +0.3 3,269,363 - ECD_03116 0.41 -0.3 3,269,371 - ECD_03116 0.42 -0.3 3,269,373 + ECD_03116 0.42 -0.8 3,269,373 + ECD_03116 0.42 -0.1 3,269,374 - ECD_03116 0.42 -0.7 3,269,403 + ECD_03116 0.44 +0.1 3,269,458 + ECD_03116 0.48 +0.0 3,269,459 - ECD_03116 0.48 +0.1 3,269,476 + ECD_03116 0.49 -0.3 3,269,477 - ECD_03116 0.49 -1.2 3,269,549 + ECD_03116 0.54 -0.5 3,269,549 + ECD_03116 0.54 +0.0 3,269,641 - ECD_03116 0.60 -0.3 3,269,771 - ECD_03116 0.69 +0.6 3,269,881 + ECD_03116 0.77 +0.4 3,269,881 + ECD_03116 0.77 +1.6 3,269,881 + ECD_03116 0.77 +0.5 3,269,882 - ECD_03116 0.77 +0.5 3,269,882 - ECD_03116 0.77 +0.9 3,269,886 + ECD_03116 0.77 +0.7 3,269,886 + ECD_03116 0.77 -0.9 3,269,887 - ECD_03116 0.77 -1.2 3,270,009 - ECD_03116 0.86 -0.3 3,270,040 - ECD_03116 0.88 -0.0 3,270,069 - +1.3 3,270,075 + +0.3 3,270,115 + -0.2 3,270,133 - +1.3 3,270,133 - -0.3 3,270,133 - -0.8 3,270,172 + -0.4 3,270,202 + +0.0 3,270,208 + +0.8 3,270,212 + -0.2 3,270,495 - ECD_03117 0.30 -0.3 3,270,617 + ECD_03117 0.44 -0.1 3,270,618 - ECD_03117 0.44 -1.4 3,270,789 + ECD_03117 0.64 +0.2 3,270,823 - ECD_03117 0.68 +0.1 3,270,862 + ECD_03117 0.72 -0.6 3,270,862 + ECD_03117 0.72 -0.2 3,270,863 - ECD_03117 0.72 +1.6 3,270,863 - ECD_03117 0.72 -1.3 3,270,932 + ECD_03117 0.80 -0.7 3,270,933 - ECD_03117 0.80 +0.6 3,271,033 + +0.6 3,271,099 - -0.0 3,271,105 + -0.3 3,271,105 + -0.2 3,271,279 + -0.2 3,271,301 + +0.6 3,271,320 + +0.2 3,271,392 - +0.6 3,271,394 + -0.1 3,271,396 + -0.7 3,271,396 + -0.3 3,271,417 + +0.2 3,271,417 + -0.6 3,271,417 + +0.3 3,271,417 + +0.1 3,271,418 - -1.9 3,271,418 - -2.4 3,271,430 + -0.3 3,271,430 + +0.8 3,271,451 + -0.2 3,271,451 + +0.4 3,271,452 - -0.8 3,271,567 + ECD_03118 0.14 +0.0 3,271,687 + ECD_03118 0.26 -0.3 3,271,688 - ECD_03118 0.26 +0.1 3,271,882 + ECD_03118 0.46 -0.3 3,271,982 + ECD_03118 0.57 +0.4 3,271,990 + ECD_03118 0.57 -0.2 3,271,990 + ECD_03118 0.57 -0.3 3,272,078 + ECD_03118 0.66 +0.2 3,272,080 + ECD_03118 0.67 +0.3 3,272,080 + ECD_03118 0.67 -0.3 3,272,080 + ECD_03118 0.67 -0.3 3,272,103 + ECD_03118 0.69 -0.6
Or see this region's nucleotide sequence