Strain Fitness in Escherichia coli BL21 around ECD_01845

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01844 and ECD_01845 are separated by 387 nucleotidesECD_01845 and ECD_01846 are separated by 13 nucleotidesECD_01846 and ECD_01847 are separated by 215 nucleotides ECD_01844: ECD_01844 - TMAO reductase III (TorYZ), cytochrome c-type subunit, at 1,902,950 to 1,904,050 _01844 ECD_01845: ECD_01845 - copper homeostasis protein, at 1,904,438 to 1,905,184 _01845 ECD_01846: ECD_01846 - putative metal-binding enzyme, at 1,905,198 to 1,905,764 _01846 ECD_01847: ECD_01847 - arginyl-tRNA synthetase, at 1,905,980 to 1,907,713 _01847 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -1 0 1at 1904.540 kb on - strand, within ECD_01845at 1904.540 kb on - strand, within ECD_01845at 1904.540 kb on - strand, within ECD_01845at 1904.540 kb on - strand, within ECD_01845at 1904.597 kb on - strand, within ECD_01845at 1905.254 kb on + strandat 1905.729 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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1,904,540 - ECD_01845 0.14 +0.6
1,904,540 - ECD_01845 0.14 -0.8
1,904,540 - ECD_01845 0.14 +0.4
1,904,540 - ECD_01845 0.14 -0.5
1,904,597 - ECD_01845 0.21 -1.0
1,905,254 + -0.4
1,905,729 - +0.7

Or see this region's nucleotide sequence