Strain Fitness in Escherichia coli BL21 around ECD_01551

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01550 and ECD_01551 are separated by 205 nucleotidesECD_01551 and ECD_01552 are separated by 134 nucleotidesECD_01552 and ECD_01553 are separated by 34 nucleotides ECD_01550: ECD_01550 - bifunctional D-altronate/D-mannonate dehydratase, at 1,599,124 to 1,600,338 _01550 ECD_01551: ECD_01551 - UPF0060 family inner membrane protein, at 1,600,544 to 1,600,870 _01551 ECD_01552: ECD_01552 - UPF0482 family putative periplasmic protein, at 1,601,005 to 1,601,346 _01552 ECD_01553: ECD_01553 - spermidine N(1)-acetyltransferase, at 1,601,381 to 1,601,941 _01553 Position (kb) 1600 1601Strain fitness (log2 ratio) -2 -1 0 1at 1600.023 kb on - strand, within ECD_01550at 1600.128 kb on - strand, within ECD_01550at 1600.684 kb on - strand, within ECD_01551at 1600.894 kb on + strandat 1600.924 kb on + strandat 1600.926 kb on + strandat 1600.926 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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1,600,023 - ECD_01550 0.74 +0.6
1,600,128 - ECD_01550 0.83 -2.0
1,600,684 - ECD_01551 0.43 +1.0
1,600,894 + +0.3
1,600,924 + +1.1
1,600,926 + -0.1
1,600,926 + +1.2

Or see this region's nucleotide sequence