Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4148 and PP_4149 are separated by 1 nucleotides PP_4149 and PP_4150 are separated by 1 nucleotides
PP_4148: PP_4148 - putative inner membrane ABC transporter permease protein, at 4,687,025 to 4,688,098
_4148
PP_4149: PP_4149 - putative inner membrane ABC transporter permease protein, at 4,688,100 to 4,689,119
_4149
PP_4150: PP_4150 - microcin C transporter - ATP binding subunit, at 4,689,121 to 4,690,725
_4150
Position (kb) 4688
4689
4690 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4687.274 kb on + strand, within PP_4148 at 4687.274 kb on + strand, within PP_4148 at 4687.274 kb on + strand, within PP_4148 at 4687.275 kb on - strand, within PP_4148 at 4687.275 kb on - strand, within PP_4148 at 4687.326 kb on - strand, within PP_4148 at 4687.326 kb on - strand at 4687.439 kb on + strand, within PP_4148 at 4687.439 kb on + strand, within PP_4148 at 4687.439 kb on + strand, within PP_4148 at 4687.439 kb on + strand, within PP_4148 at 4687.439 kb on + strand, within PP_4148 at 4687.439 kb on + strand, within PP_4148 at 4687.440 kb on - strand, within PP_4148 at 4687.440 kb on - strand, within PP_4148 at 4687.530 kb on - strand, within PP_4148 at 4687.589 kb on + strand, within PP_4148 at 4687.667 kb on + strand, within PP_4148 at 4687.667 kb on + strand, within PP_4148 at 4687.668 kb on - strand, within PP_4148 at 4687.668 kb on - strand, within PP_4148 at 4687.772 kb on + strand, within PP_4148 at 4687.772 kb on + strand, within PP_4148 at 4687.773 kb on - strand, within PP_4148 at 4687.773 kb on - strand, within PP_4148 at 4688.051 kb on + strand at 4688.052 kb on - strand at 4688.052 kb on - strand at 4688.052 kb on - strand at 4688.052 kb on - strand at 4688.052 kb on - strand at 4688.263 kb on - strand, within PP_4149 at 4688.328 kb on + strand, within PP_4149 at 4688.329 kb on - strand, within PP_4149 at 4688.340 kb on + strand, within PP_4149 at 4688.340 kb on + strand, within PP_4149 at 4688.341 kb on - strand, within PP_4149 at 4688.341 kb on - strand, within PP_4149 at 4688.341 kb on - strand, within PP_4149 at 4688.418 kb on + strand, within PP_4149 at 4688.418 kb on + strand, within PP_4149 at 4688.418 kb on + strand, within PP_4149 at 4688.418 kb on + strand, within PP_4149 at 4688.419 kb on - strand, within PP_4149 at 4688.419 kb on - strand at 4688.419 kb on - strand, within PP_4149 at 4688.419 kb on - strand, within PP_4149 at 4688.512 kb on - strand, within PP_4149 at 4688.512 kb on - strand, within PP_4149 at 4688.602 kb on - strand, within PP_4149 at 4688.602 kb on - strand, within PP_4149 at 4688.602 kb on - strand, within PP_4149 at 4688.667 kb on + strand, within PP_4149 at 4688.667 kb on + strand, within PP_4149 at 4688.667 kb on + strand, within PP_4149 at 4688.668 kb on - strand, within PP_4149 at 4688.800 kb on - strand, within PP_4149 at 4688.848 kb on - strand, within PP_4149 at 4689.738 kb on + strand, within PP_4150 at 4689.877 kb on + strand, within PP_4150 at 4689.877 kb on + strand, within PP_4150 at 4689.877 kb on + strand, within PP_4150 at 4689.877 kb on + strand, within PP_4150 at 4689.878 kb on - strand, within PP_4150
Per-strain Table
Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. remove 4,687,274 + PP_4148 0.23 -0.7 4,687,274 + PP_4148 0.23 -0.7 4,687,274 + PP_4148 0.23 -0.1 4,687,275 - PP_4148 0.23 -0.6 4,687,275 - PP_4148 0.23 -1.6 4,687,326 - PP_4148 0.28 -0.6 4,687,326 - +0.7 4,687,439 + PP_4148 0.39 +0.4 4,687,439 + PP_4148 0.39 +1.3 4,687,439 + PP_4148 0.39 -2.2 4,687,439 + PP_4148 0.39 +1.0 4,687,439 + PP_4148 0.39 -1.0 4,687,439 + PP_4148 0.39 -0.9 4,687,440 - PP_4148 0.39 +0.2 4,687,440 - PP_4148 0.39 +1.7 4,687,530 - PP_4148 0.47 +0.3 4,687,589 + PP_4148 0.53 +0.5 4,687,667 + PP_4148 0.60 -0.4 4,687,667 + PP_4148 0.60 -0.1 4,687,668 - PP_4148 0.60 -0.2 4,687,668 - PP_4148 0.60 +0.5 4,687,772 + PP_4148 0.70 +0.0 4,687,772 + PP_4148 0.70 -0.4 4,687,773 - PP_4148 0.70 +1.6 4,687,773 - PP_4148 0.70 +0.8 4,688,051 + -0.9 4,688,052 - -0.4 4,688,052 - +0.4 4,688,052 - -0.7 4,688,052 - -0.4 4,688,052 - +0.5 4,688,263 - PP_4149 0.16 -0.2 4,688,328 + PP_4149 0.22 +1.1 4,688,329 - PP_4149 0.22 -0.6 4,688,340 + PP_4149 0.24 -0.3 4,688,340 + PP_4149 0.24 +0.9 4,688,341 - PP_4149 0.24 -1.1 4,688,341 - PP_4149 0.24 -0.4 4,688,341 - PP_4149 0.24 +1.0 4,688,418 + PP_4149 0.31 -2.4 4,688,418 + PP_4149 0.31 +3.3 4,688,418 + PP_4149 0.31 -1.3 4,688,418 + PP_4149 0.31 +1.3 4,688,419 - PP_4149 0.31 +0.5 4,688,419 - +1.3 4,688,419 - PP_4149 0.31 -0.3 4,688,419 - PP_4149 0.31 -0.8 4,688,512 - PP_4149 0.40 +0.2 4,688,512 - PP_4149 0.40 +0.1 4,688,602 - PP_4149 0.49 +0.8 4,688,602 - PP_4149 0.49 -0.2 4,688,602 - PP_4149 0.49 +0.1 4,688,667 + PP_4149 0.56 -0.2 4,688,667 + PP_4149 0.56 -0.6 4,688,667 + PP_4149 0.56 +0.3 4,688,668 - PP_4149 0.56 +0.2 4,688,800 - PP_4149 0.69 +0.7 4,688,848 - PP_4149 0.73 -0.6 4,689,738 + PP_4150 0.38 -0.4 4,689,877 + PP_4150 0.47 -0.8 4,689,877 + PP_4150 0.47 -1.2 4,689,877 + PP_4150 0.47 -0.4 4,689,877 + PP_4150 0.47 -0.2 4,689,878 - PP_4150 0.47 -1.0
Or see this region's nucleotide sequence