Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3564 and PP_3565 are separated by 104 nucleotides PP_3565 and PP_3566 are separated by 48 nucleotides PP_3566 and PP_3567 are separated by 106 nucleotides
PP_3564: PP_3564 - Transcriptional regulator, AraC family, at 4,042,766 to 4,043,743
_3564
PP_3565: PP_3565 - Transporter, LysE family, at 4,043,848 to 4,044,459
_3565
PP_3566: PP_3566 - Major facilitator family transporter, at 4,044,508 to 4,045,707
_3566
PP_3567: PP_3567 - Transcriptional regulator, LysR family, at 4,045,814 to 4,046,719
_3567
Position (kb) 4044
4045
4046 Strain fitness (log2 ratio) -1
0
1
2 at 4043.519 kb on + strand, within PP_3564 at 4043.520 kb on - strand, within PP_3564 at 4043.637 kb on + strand, within PP_3564 at 4043.780 kb on + strand at 4043.781 kb on - strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.811 kb on - strand at 4043.811 kb on - strand at 4043.811 kb on - strand at 4043.872 kb on + strand at 4043.872 kb on + strand at 4043.872 kb on + strand at 4043.873 kb on - strand at 4043.947 kb on + strand, within PP_3565 at 4043.948 kb on - strand, within PP_3565 at 4044.091 kb on + strand, within PP_3565 at 4044.116 kb on + strand, within PP_3565 at 4044.117 kb on - strand, within PP_3565 at 4044.117 kb on - strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.236 kb on - strand, within PP_3565 at 4044.236 kb on - strand, within PP_3565 at 4044.659 kb on + strand, within PP_3566 at 4044.659 kb on + strand, within PP_3566 at 4044.659 kb on + strand, within PP_3566 at 4044.660 kb on - strand, within PP_3566 at 4044.701 kb on + strand, within PP_3566 at 4044.701 kb on + strand, within PP_3566 at 4044.702 kb on - strand, within PP_3566 at 4044.702 kb on - strand, within PP_3566 at 4044.899 kb on - strand, within PP_3566 at 4044.899 kb on - strand, within PP_3566 at 4044.992 kb on + strand, within PP_3566 at 4045.025 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.269 kb on + strand, within PP_3566 at 4045.418 kb on - strand, within PP_3566 at 4045.418 kb on - strand, within PP_3566 at 4045.496 kb on - strand, within PP_3566 at 4045.511 kb on + strand, within PP_3566 at 4045.511 kb on + strand, within PP_3566 at 4045.604 kb on + strand at 4045.604 kb on + strand at 4045.605 kb on - strand at 4045.649 kb on - strand at 4045.697 kb on + strand at 4045.733 kb on + strand at 4045.734 kb on - strand at 4045.734 kb on - strand at 4045.734 kb on - strand at 4045.735 kb on + strand at 4045.736 kb on - strand at 4045.736 kb on - strand at 4045.750 kb on - strand at 4045.815 kb on + strand at 4045.815 kb on + strand at 4045.891 kb on + strand at 4045.891 kb on + strand at 4045.891 kb on + strand at 4045.892 kb on - strand at 4045.892 kb on - strand at 4045.892 kb on - strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.893 kb on + strand at 4045.894 kb on - strand at 4045.894 kb on - strand at 4045.894 kb on - strand at 4045.894 kb on - strand at 4045.894 kb on - strand at 4045.894 kb on - strand at 4045.912 kb on + strand, within PP_3567 at 4045.912 kb on + strand, within PP_3567 at 4045.912 kb on + strand, within PP_3567 at 4045.950 kb on - strand, within PP_3567 at 4046.075 kb on + strand, within PP_3567 at 4046.075 kb on + strand, within PP_3567 at 4046.075 kb on + strand, within PP_3567 at 4046.075 kb on + strand, within PP_3567 at 4046.076 kb on - strand, within PP_3567 at 4046.076 kb on - strand, within PP_3567 at 4046.205 kb on + strand, within PP_3567 at 4046.523 kb on + strand, within PP_3567 at 4046.523 kb on + strand, within PP_3567 at 4046.524 kb on - strand, within PP_3567 at 4046.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. remove 4,043,519 + PP_3564 0.77 -0.6 4,043,520 - PP_3564 0.77 -0.6 4,043,637 + PP_3564 0.89 +0.6 4,043,780 + -0.2 4,043,781 - +0.4 4,043,810 + +0.3 4,043,810 + +0.7 4,043,810 + -0.3 4,043,810 + -0.5 4,043,811 - +0.7 4,043,811 - -0.4 4,043,811 - -0.5 4,043,872 + -1.1 4,043,872 + +0.1 4,043,872 + +0.2 4,043,873 - -0.2 4,043,947 + PP_3565 0.16 -0.4 4,043,948 - PP_3565 0.16 -0.5 4,044,091 + PP_3565 0.40 +0.5 4,044,116 + PP_3565 0.44 +0.0 4,044,117 - PP_3565 0.44 -1.3 4,044,117 - PP_3565 0.44 -0.5 4,044,235 + PP_3565 0.63 +0.5 4,044,235 + PP_3565 0.63 -0.3 4,044,235 + PP_3565 0.63 +0.6 4,044,235 + PP_3565 0.63 +0.3 4,044,235 + PP_3565 0.63 -0.2 4,044,235 + PP_3565 0.63 -0.3 4,044,235 + PP_3565 0.63 +1.3 4,044,235 + PP_3565 0.63 -0.1 4,044,236 - PP_3565 0.63 +0.4 4,044,236 - PP_3565 0.63 +0.1 4,044,659 + PP_3566 0.13 -0.7 4,044,659 + PP_3566 0.13 +0.2 4,044,659 + PP_3566 0.13 +0.9 4,044,660 - PP_3566 0.13 +0.5 4,044,701 + PP_3566 0.16 -0.3 4,044,701 + PP_3566 0.16 +0.5 4,044,702 - PP_3566 0.16 +0.3 4,044,702 - PP_3566 0.16 +0.1 4,044,899 - PP_3566 0.33 +1.0 4,044,899 - PP_3566 0.33 -0.0 4,044,992 + PP_3566 0.40 +0.6 4,045,025 + PP_3566 0.43 -0.5 4,045,094 + PP_3566 0.49 +1.0 4,045,094 + PP_3566 0.49 +0.3 4,045,094 + PP_3566 0.49 -0.6 4,045,094 + PP_3566 0.49 +0.4 4,045,095 - PP_3566 0.49 +0.9 4,045,095 - PP_3566 0.49 +0.2 4,045,095 - PP_3566 0.49 +0.5 4,045,095 - PP_3566 0.49 +0.6 4,045,269 + PP_3566 0.63 +1.3 4,045,418 - PP_3566 0.76 +0.4 4,045,418 - PP_3566 0.76 +0.6 4,045,496 - PP_3566 0.82 +0.3 4,045,511 + PP_3566 0.84 +1.1 4,045,511 + PP_3566 0.84 -1.1 4,045,604 + -0.8 4,045,604 + +0.2 4,045,605 - -0.2 4,045,649 - -0.1 4,045,697 + +0.2 4,045,733 + +0.7 4,045,734 - +0.5 4,045,734 - -0.5 4,045,734 - +0.8 4,045,735 + -0.1 4,045,736 - -1.0 4,045,736 - +0.1 4,045,750 - -1.4 4,045,815 + -0.1 4,045,815 + +0.5 4,045,891 + -0.9 4,045,891 + +0.4 4,045,891 + +0.5 4,045,892 - -0.5 4,045,892 - -0.5 4,045,892 - +0.1 4,045,893 + +2.3 4,045,893 + -1.0 4,045,893 + -0.5 4,045,893 + -1.1 4,045,893 + -0.1 4,045,893 + +0.2 4,045,893 + +0.2 4,045,893 + -0.3 4,045,893 + +1.2 4,045,893 + +0.3 4,045,893 + -0.4 4,045,894 - -0.5 4,045,894 - -0.1 4,045,894 - -1.0 4,045,894 - +1.3 4,045,894 - -0.7 4,045,894 - -0.7 4,045,912 + PP_3567 0.11 -0.6 4,045,912 + PP_3567 0.11 -0.3 4,045,912 + PP_3567 0.11 -0.9 4,045,950 - PP_3567 0.15 +0.4 4,046,075 + PP_3567 0.29 +0.9 4,046,075 + PP_3567 0.29 -0.4 4,046,075 + PP_3567 0.29 -0.2 4,046,075 + PP_3567 0.29 -0.1 4,046,076 - PP_3567 0.29 +0.1 4,046,076 - PP_3567 0.29 +0.6 4,046,205 + PP_3567 0.43 +0.3 4,046,523 + PP_3567 0.78 -0.3 4,046,523 + PP_3567 0.78 -0.2 4,046,524 - PP_3567 0.78 +0.0 4,046,643 - -1.0
Or see this region's nucleotide sequence