Strain Fitness in Escherichia coli BW25113 around b3932
Experiment: LB Aerobic with Hygromycin B 0.000015625 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB Aerobic with Hygromycin B 0.000015625 mM |
---|---|---|---|---|---|
remove | |||||
4,118,792 | + | hslU | b3931 | 0.27 | -1.0 |
4,118,800 | + | hslU | b3931 | 0.27 | +0.4 |
4,118,807 | + | hslU | b3931 | 0.28 | -0.6 |
4,118,836 | + | hslU | b3931 | 0.30 | -0.2 |
4,118,849 | - | hslU | b3931 | 0.31 | -2.1 |
4,118,849 | - | hslU | b3931 | 0.31 | -0.9 |
4,118,868 | - | hslU | b3931 | 0.32 | -1.9 |
4,118,868 | - | hslU | b3931 | 0.32 | +0.1 |
4,118,897 | - | hslU | b3931 | 0.34 | -2.3 |
4,118,958 | + | hslU | b3931 | 0.39 | -3.0 |
4,118,965 | - | hslU | b3931 | 0.39 | -0.9 |
4,119,011 | + | hslU | b3931 | 0.43 | +0.1 |
4,119,011 | + | hslU | b3931 | 0.43 | +0.1 |
4,119,016 | + | hslU | b3931 | 0.43 | -0.8 |
4,119,019 | - | hslU | b3931 | 0.44 | -2.1 |
4,119,024 | - | hslU | b3931 | 0.44 | +0.1 |
4,119,024 | - | hslU | b3931 | 0.44 | -0.7 |
4,119,026 | + | hslU | b3931 | 0.44 | -0.9 |
4,119,032 | - | hslU | b3931 | 0.45 | -2.2 |
4,119,043 | - | hslU | b3931 | 0.45 | -1.9 |
4,119,047 | - | hslU | b3931 | 0.46 | -1.5 |
4,119,047 | - | hslU | b3931 | 0.46 | -2.9 |
4,119,051 | + | hslU | b3931 | 0.46 | -1.4 |
4,119,101 | + | hslU | b3931 | 0.50 | -1.8 |
4,119,111 | - | hslU | b3931 | 0.50 | -1.1 |
4,119,145 | + | hslU | b3931 | 0.53 | +0.4 |
4,119,145 | + | hslU | b3931 | 0.53 | -0.9 |
4,119,163 | - | hslU | b3931 | 0.54 | +1.1 |
4,119,163 | - | hslU | b3931 | 0.54 | -3.0 |
4,119,169 | + | hslU | b3931 | 0.55 | -2.1 |
4,119,171 | - | hslU | b3931 | 0.55 | -1.4 |
4,119,199 | - | hslU | b3931 | 0.57 | -0.8 |
4,119,253 | + | hslU | b3931 | 0.61 | -1.6 |
4,119,345 | + | hslU | b3931 | 0.68 | -0.9 |
4,119,403 | - | hslU | b3931 | 0.72 | -0.1 |
4,119,452 | - | hslU | b3931 | 0.76 | -1.1 |
4,119,462 | - | hslU | b3931 | 0.77 | -1.1 |
4,119,487 | + | hslU | b3931 | 0.79 | +0.0 |
4,119,489 | + | hslU | b3931 | 0.79 | +0.4 |
4,119,489 | + | hslU | b3931 | 0.79 | -2.3 |
4,119,493 | - | hslU | b3931 | 0.79 | -1.9 |
4,119,513 | + | hslU | b3931 | 0.81 | -2.2 |
4,119,555 | - | hslU | b3931 | 0.84 | -1.7 |
4,119,561 | - | hslU | b3931 | 0.84 | -3.0 |
4,119,597 | - | hslU | b3931 | 0.87 | -1.5 |
4,119,597 | - | hslU | b3931 | 0.87 | -2.6 |
4,119,670 | + | +0.1 | |||
4,119,686 | + | -0.9 | |||
4,119,686 | + | -1.4 | |||
4,119,691 | + | -1.2 | |||
4,119,697 | + | -1.5 | |||
4,119,697 | + | -2.9 | |||
4,119,698 | + | -1.4 | |||
4,119,703 | + | +0.7 | |||
4,119,703 | + | -2.1 | |||
4,119,703 | + | -2.3 | |||
4,119,703 | + | -1.9 | |||
4,119,703 | + | -1.5 | |||
4,119,703 | + | -2.4 | |||
4,119,703 | + | -1.6 | |||
4,119,704 | - | -1.8 | |||
4,119,708 | + | -0.2 | |||
4,119,732 | - | -1.4 | |||
4,119,736 | + | -3.3 | |||
4,119,777 | + | -1.5 | |||
4,119,777 | + | +0.1 | |||
4,119,778 | - | -1.7 | |||
4,119,795 | - | -0.9 | |||
4,119,795 | - | -1.5 | |||
4,119,795 | - | +0.8 | |||
4,119,816 | - | -1.5 | |||
4,119,816 | - | +0.1 | |||
4,119,816 | - | -0.3 | |||
4,119,823 | + | -1.5 | |||
4,119,828 | + | -1.5 | |||
4,119,876 | + | hslV | b3932 | 0.18 | -1.7 |
4,119,877 | - | hslV | b3932 | 0.18 | -0.1 |
4,119,879 | + | hslV | b3932 | 0.19 | -0.8 |
4,119,884 | + | hslV | b3932 | 0.20 | -2.3 |
4,119,897 | - | hslV | b3932 | 0.22 | -1.2 |
4,119,897 | - | hslV | b3932 | 0.22 | +0.1 |
4,119,900 | - | hslV | b3932 | 0.23 | -1.1 |
4,119,900 | - | hslV | b3932 | 0.23 | -2.1 |
4,119,966 | - | hslV | b3932 | 0.35 | -0.2 |
4,119,981 | - | hslV | b3932 | 0.38 | +1.1 |
4,119,989 | - | hslV | b3932 | 0.39 | -0.5 |
4,119,991 | + | hslV | b3932 | 0.40 | -0.8 |
4,120,026 | - | hslV | b3932 | 0.46 | -1.5 |
4,120,028 | - | hslV | b3932 | 0.47 | -1.8 |
4,120,046 | + | hslV | b3932 | 0.50 | -1.6 |
4,120,046 | + | hslV | b3932 | 0.50 | -2.5 |
4,120,053 | + | hslV | b3932 | 0.51 | -2.3 |
4,120,055 | + | hslV | b3932 | 0.52 | -0.7 |
4,120,055 | + | hslV | b3932 | 0.52 | -1.2 |
4,120,057 | + | hslV | b3932 | 0.52 | +0.8 |
4,120,057 | + | hslV | b3932 | 0.52 | -1.3 |
4,120,076 | + | hslV | b3932 | 0.56 | -0.1 |
4,120,076 | + | hslV | b3932 | 0.56 | -1.0 |
4,120,087 | + | hslV | b3932 | 0.58 | -1.5 |
4,120,142 | + | hslV | b3932 | 0.68 | -0.2 |
4,120,142 | + | hslV | b3932 | 0.68 | -1.8 |
4,120,142 | + | hslV | b3932 | 0.68 | -2.7 |
4,120,155 | - | hslV | b3932 | 0.71 | -0.9 |
4,120,162 | - | hslV | b3932 | 0.72 | -0.5 |
4,120,162 | - | hslV | b3932 | 0.72 | +1.1 |
4,120,173 | + | hslV | b3932 | 0.74 | -1.4 |
4,120,210 | + | hslV | b3932 | 0.81 | -2.4 |
4,120,232 | + | hslV | b3932 | 0.85 | -3.3 |
4,120,232 | + | hslV | b3932 | 0.85 | -1.2 |
4,120,234 | - | hslV | b3932 | 0.85 | -0.9 |
4,120,242 | - | hslV | b3932 | 0.87 | -1.9 |
4,120,243 | + | hslV | b3932 | 0.87 | -1.4 |
4,120,243 | + | hslV | b3932 | 0.87 | -1.0 |
4,120,251 | - | hslV | b3932 | 0.89 | -1.9 |
4,120,256 | - | hslV | b3932 | 0.90 | -0.8 |
4,120,287 | + | -2.3 | |||
4,120,289 | - | -0.1 | |||
4,120,289 | - | -1.5 | |||
4,120,303 | - | -0.7 | |||
4,120,329 | + | -1.6 | |||
4,120,339 | + | -1.3 | |||
4,120,357 | + | -0.8 | |||
4,120,361 | - | +0.1 | |||
4,120,383 | - | -1.8 | |||
4,120,441 | - | +0.0 | |||
4,120,456 | + | -1.1 | |||
4,120,456 | - | -1.3 | |||
4,120,464 | - | -1.5 | |||
4,120,518 | + | ftsN | b3933 | 0.12 | -2.1 |
4,120,518 | + | ftsN | b3933 | 0.12 | -1.9 |
4,120,564 | - | ftsN | b3933 | 0.17 | -1.2 |
4,120,564 | - | ftsN | b3933 | 0.17 | -0.2 |
4,120,569 | - | ftsN | b3933 | 0.17 | -1.1 |
4,120,575 | + | ftsN | b3933 | 0.18 | -3.1 |
4,120,575 | + | ftsN | b3933 | 0.18 | +1.1 |
4,120,578 | - | ftsN | b3933 | 0.18 | -0.7 |
4,120,601 | - | ftsN | b3933 | 0.21 | -1.0 |
4,120,601 | - | ftsN | b3933 | 0.21 | -0.9 |
4,120,601 | - | ftsN | b3933 | 0.21 | -1.5 |
4,120,607 | + | ftsN | b3933 | 0.21 | -1.5 |
4,120,607 | + | ftsN | b3933 | 0.21 | -1.7 |
4,120,607 | + | ftsN | b3933 | 0.21 | -0.1 |
4,120,615 | - | ftsN | b3933 | 0.22 | -0.7 |
4,120,615 | - | ftsN | b3933 | 0.22 | +0.1 |
4,120,615 | - | ftsN | b3933 | 0.22 | +0.7 |
4,120,651 | + | ftsN | b3933 | 0.26 | -3.4 |
4,120,653 | - | ftsN | b3933 | 0.26 | -1.1 |
4,120,653 | - | ftsN | b3933 | 0.26 | -0.7 |
4,120,670 | - | ftsN | b3933 | 0.28 | -0.0 |
4,120,670 | - | ftsN | b3933 | 0.28 | -0.3 |
4,120,681 | + | ftsN | b3933 | 0.29 | -1.0 |
4,120,695 | + | ftsN | b3933 | 0.30 | -1.3 |
4,120,695 | + | ftsN | b3933 | 0.30 | -1.2 |
4,120,715 | - | ftsN | b3933 | 0.33 | -0.1 |
4,120,740 | + | ftsN | b3933 | 0.35 | -0.9 |
4,120,740 | + | ftsN | b3933 | 0.35 | +2.7 |
4,120,763 | - | ftsN | b3933 | 0.38 | -0.3 |
4,120,765 | + | ftsN | b3933 | 0.38 | -0.5 |
4,120,767 | + | ftsN | b3933 | 0.38 | -2.2 |
4,120,773 | - | ftsN | b3933 | 0.39 | -1.4 |
4,120,784 | + | ftsN | b3933 | 0.40 | -1.7 |
4,120,786 | + | ftsN | b3933 | 0.40 | -0.9 |
4,120,786 | + | ftsN | b3933 | 0.40 | +0.1 |
4,120,787 | - | ftsN | b3933 | 0.40 | -0.4 |
4,120,845 | + | ftsN | b3933 | 0.46 | -0.9 |
4,120,855 | + | ftsN | b3933 | 0.47 | -0.9 |
4,120,858 | - | ftsN | b3933 | 0.47 | -2.3 |
4,120,865 | + | ftsN | b3933 | 0.48 | +0.1 |
4,120,899 | - | ftsN | b3933 | 0.52 | -1.3 |
4,120,899 | - | ftsN | b3933 | 0.52 | -0.2 |
4,120,919 | + | ftsN | b3933 | 0.54 | +0.1 |
4,120,929 | - | ftsN | b3933 | 0.55 | +0.1 |
4,120,929 | - | ftsN | b3933 | 0.55 | +0.4 |
4,121,001 | - | ftsN | b3933 | 0.62 | -1.1 |
4,121,001 | - | ftsN | b3933 | 0.62 | -0.0 |
Or see this region's nucleotide sequence