Strain Fitness in Escherichia coli BW25113 around b3932

Experiment: LB Aerobic with Hygromycin B 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthslU and hslV are separated by 9 nucleotideshslV and ftsN are separated by 92 nucleotides b3931: hslU - ATP-dependent protease ATP-binding subunit (NCBI), at 4,118,439 to 4,119,770 hslU b3932: hslV - ATP-dependent protease peptidase subunit (NCBI), at 4,119,780 to 4,120,310 hslV b3933: ftsN - essential cell division protein (NCBI), at 4,120,403 to 4,121,362 ftsN Position (kb) 4119 4120 4121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4118.792 kb on + strand, within hslUat 4118.800 kb on + strand, within hslUat 4118.807 kb on + strand, within hslUat 4118.836 kb on + strand, within hslUat 4118.849 kb on - strand, within hslUat 4118.849 kb on - strand, within hslUat 4118.868 kb on - strand, within hslUat 4118.868 kb on - strand, within hslUat 4118.897 kb on - strand, within hslUat 4118.958 kb on + strand, within hslUat 4118.965 kb on - strand, within hslUat 4119.011 kb on + strand, within hslUat 4119.011 kb on + strand, within hslUat 4119.016 kb on + strand, within hslUat 4119.019 kb on - strand, within hslUat 4119.024 kb on - strand, within hslUat 4119.024 kb on - strand, within hslUat 4119.026 kb on + strand, within hslUat 4119.032 kb on - strand, within hslUat 4119.043 kb on - strand, within hslUat 4119.047 kb on - strand, within hslUat 4119.047 kb on - strand, within hslUat 4119.051 kb on + strand, within hslUat 4119.101 kb on + strand, within hslUat 4119.111 kb on - strand, within hslUat 4119.145 kb on + strand, within hslUat 4119.145 kb on + strand, within hslUat 4119.163 kb on - strand, within hslUat 4119.163 kb on - strand, within hslUat 4119.169 kb on + strand, within hslUat 4119.171 kb on - strand, within hslUat 4119.199 kb on - strand, within hslUat 4119.253 kb on + strand, within hslUat 4119.345 kb on + strand, within hslUat 4119.403 kb on - strand, within hslUat 4119.452 kb on - strand, within hslUat 4119.462 kb on - strand, within hslUat 4119.487 kb on + strand, within hslUat 4119.489 kb on + strand, within hslUat 4119.489 kb on + strand, within hslUat 4119.493 kb on - strand, within hslUat 4119.513 kb on + strand, within hslUat 4119.555 kb on - strand, within hslUat 4119.561 kb on - strand, within hslUat 4119.597 kb on - strand, within hslUat 4119.597 kb on - strand, within hslUat 4119.670 kb on + strandat 4119.686 kb on + strandat 4119.686 kb on + strandat 4119.691 kb on + strandat 4119.697 kb on + strandat 4119.697 kb on + strandat 4119.698 kb on + strandat 4119.703 kb on + strandat 4119.703 kb on + strandat 4119.703 kb on + strandat 4119.703 kb on + strandat 4119.703 kb on + strandat 4119.703 kb on + strandat 4119.703 kb on + strandat 4119.704 kb on - strandat 4119.708 kb on + strandat 4119.732 kb on - strandat 4119.736 kb on + strandat 4119.777 kb on + strandat 4119.777 kb on + strandat 4119.778 kb on - strandat 4119.795 kb on - strandat 4119.795 kb on - strandat 4119.795 kb on - strandat 4119.816 kb on - strandat 4119.816 kb on - strandat 4119.816 kb on - strandat 4119.823 kb on + strandat 4119.828 kb on + strandat 4119.876 kb on + strand, within hslVat 4119.877 kb on - strand, within hslVat 4119.879 kb on + strand, within hslVat 4119.884 kb on + strand, within hslVat 4119.897 kb on - strand, within hslVat 4119.897 kb on - strand, within hslVat 4119.900 kb on - strand, within hslVat 4119.900 kb on - strand, within hslVat 4119.966 kb on - strand, within hslVat 4119.981 kb on - strand, within hslVat 4119.989 kb on - strand, within hslVat 4119.991 kb on + strand, within hslVat 4120.026 kb on - strand, within hslVat 4120.028 kb on - strand, within hslVat 4120.046 kb on + strand, within hslVat 4120.046 kb on + strand, within hslVat 4120.053 kb on + strand, within hslVat 4120.055 kb on + strand, within hslVat 4120.055 kb on + strand, within hslVat 4120.057 kb on + strand, within hslVat 4120.057 kb on + strand, within hslVat 4120.076 kb on + strand, within hslVat 4120.076 kb on + strand, within hslVat 4120.087 kb on + strand, within hslVat 4120.142 kb on + strand, within hslVat 4120.142 kb on + strand, within hslVat 4120.142 kb on + strand, within hslVat 4120.155 kb on - strand, within hslVat 4120.162 kb on - strand, within hslVat 4120.162 kb on - strand, within hslVat 4120.173 kb on + strand, within hslVat 4120.210 kb on + strand, within hslVat 4120.232 kb on + strand, within hslVat 4120.232 kb on + strand, within hslVat 4120.234 kb on - strand, within hslVat 4120.242 kb on - strand, within hslVat 4120.243 kb on + strand, within hslVat 4120.243 kb on + strand, within hslVat 4120.251 kb on - strand, within hslVat 4120.256 kb on - strand, within hslVat 4120.287 kb on + strandat 4120.289 kb on - strandat 4120.289 kb on - strandat 4120.303 kb on - strandat 4120.329 kb on + strandat 4120.339 kb on + strandat 4120.357 kb on + strandat 4120.361 kb on - strandat 4120.383 kb on - strandat 4120.441 kb on - strandat 4120.456 kb on + strandat 4120.456 kb on - strandat 4120.464 kb on - strandat 4120.518 kb on + strand, within ftsNat 4120.518 kb on + strand, within ftsNat 4120.564 kb on - strand, within ftsNat 4120.564 kb on - strand, within ftsNat 4120.569 kb on - strand, within ftsNat 4120.575 kb on + strand, within ftsNat 4120.575 kb on + strand, within ftsNat 4120.578 kb on - strand, within ftsNat 4120.601 kb on - strand, within ftsNat 4120.601 kb on - strand, within ftsNat 4120.601 kb on - strand, within ftsNat 4120.607 kb on + strand, within ftsNat 4120.607 kb on + strand, within ftsNat 4120.607 kb on + strand, within ftsNat 4120.615 kb on - strand, within ftsNat 4120.615 kb on - strand, within ftsNat 4120.615 kb on - strand, within ftsNat 4120.651 kb on + strand, within ftsNat 4120.653 kb on - strand, within ftsNat 4120.653 kb on - strand, within ftsNat 4120.670 kb on - strand, within ftsNat 4120.670 kb on - strand, within ftsNat 4120.681 kb on + strand, within ftsNat 4120.695 kb on + strand, within ftsNat 4120.695 kb on + strand, within ftsNat 4120.715 kb on - strand, within ftsNat 4120.740 kb on + strand, within ftsNat 4120.740 kb on + strand, within ftsNat 4120.763 kb on - strand, within ftsNat 4120.765 kb on + strand, within ftsNat 4120.767 kb on + strand, within ftsNat 4120.773 kb on - strand, within ftsNat 4120.784 kb on + strand, within ftsNat 4120.786 kb on + strand, within ftsNat 4120.786 kb on + strand, within ftsNat 4120.787 kb on - strand, within ftsNat 4120.845 kb on + strand, within ftsNat 4120.855 kb on + strand, within ftsNat 4120.858 kb on - strand, within ftsNat 4120.865 kb on + strand, within ftsNat 4120.899 kb on - strand, within ftsNat 4120.899 kb on - strand, within ftsNat 4120.919 kb on + strand, within ftsNat 4120.929 kb on - strand, within ftsNat 4120.929 kb on - strand, within ftsNat 4121.001 kb on - strand, within ftsNat 4121.001 kb on - strand, within ftsN

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Hygromycin B 0.000015625 mM
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4,118,792 + hslU b3931 0.27 -1.0
4,118,800 + hslU b3931 0.27 +0.4
4,118,807 + hslU b3931 0.28 -0.6
4,118,836 + hslU b3931 0.30 -0.2
4,118,849 - hslU b3931 0.31 -2.1
4,118,849 - hslU b3931 0.31 -0.9
4,118,868 - hslU b3931 0.32 -1.9
4,118,868 - hslU b3931 0.32 +0.1
4,118,897 - hslU b3931 0.34 -2.3
4,118,958 + hslU b3931 0.39 -3.0
4,118,965 - hslU b3931 0.39 -0.9
4,119,011 + hslU b3931 0.43 +0.1
4,119,011 + hslU b3931 0.43 +0.1
4,119,016 + hslU b3931 0.43 -0.8
4,119,019 - hslU b3931 0.44 -2.1
4,119,024 - hslU b3931 0.44 +0.1
4,119,024 - hslU b3931 0.44 -0.7
4,119,026 + hslU b3931 0.44 -0.9
4,119,032 - hslU b3931 0.45 -2.2
4,119,043 - hslU b3931 0.45 -1.9
4,119,047 - hslU b3931 0.46 -1.5
4,119,047 - hslU b3931 0.46 -2.9
4,119,051 + hslU b3931 0.46 -1.4
4,119,101 + hslU b3931 0.50 -1.8
4,119,111 - hslU b3931 0.50 -1.1
4,119,145 + hslU b3931 0.53 +0.4
4,119,145 + hslU b3931 0.53 -0.9
4,119,163 - hslU b3931 0.54 +1.1
4,119,163 - hslU b3931 0.54 -3.0
4,119,169 + hslU b3931 0.55 -2.1
4,119,171 - hslU b3931 0.55 -1.4
4,119,199 - hslU b3931 0.57 -0.8
4,119,253 + hslU b3931 0.61 -1.6
4,119,345 + hslU b3931 0.68 -0.9
4,119,403 - hslU b3931 0.72 -0.1
4,119,452 - hslU b3931 0.76 -1.1
4,119,462 - hslU b3931 0.77 -1.1
4,119,487 + hslU b3931 0.79 +0.0
4,119,489 + hslU b3931 0.79 +0.4
4,119,489 + hslU b3931 0.79 -2.3
4,119,493 - hslU b3931 0.79 -1.9
4,119,513 + hslU b3931 0.81 -2.2
4,119,555 - hslU b3931 0.84 -1.7
4,119,561 - hslU b3931 0.84 -3.0
4,119,597 - hslU b3931 0.87 -1.5
4,119,597 - hslU b3931 0.87 -2.6
4,119,670 + +0.1
4,119,686 + -0.9
4,119,686 + -1.4
4,119,691 + -1.2
4,119,697 + -1.5
4,119,697 + -2.9
4,119,698 + -1.4
4,119,703 + +0.7
4,119,703 + -2.1
4,119,703 + -2.3
4,119,703 + -1.9
4,119,703 + -1.5
4,119,703 + -2.4
4,119,703 + -1.6
4,119,704 - -1.8
4,119,708 + -0.2
4,119,732 - -1.4
4,119,736 + -3.3
4,119,777 + -1.5
4,119,777 + +0.1
4,119,778 - -1.7
4,119,795 - -0.9
4,119,795 - -1.5
4,119,795 - +0.8
4,119,816 - -1.5
4,119,816 - +0.1
4,119,816 - -0.3
4,119,823 + -1.5
4,119,828 + -1.5
4,119,876 + hslV b3932 0.18 -1.7
4,119,877 - hslV b3932 0.18 -0.1
4,119,879 + hslV b3932 0.19 -0.8
4,119,884 + hslV b3932 0.20 -2.3
4,119,897 - hslV b3932 0.22 -1.2
4,119,897 - hslV b3932 0.22 +0.1
4,119,900 - hslV b3932 0.23 -1.1
4,119,900 - hslV b3932 0.23 -2.1
4,119,966 - hslV b3932 0.35 -0.2
4,119,981 - hslV b3932 0.38 +1.1
4,119,989 - hslV b3932 0.39 -0.5
4,119,991 + hslV b3932 0.40 -0.8
4,120,026 - hslV b3932 0.46 -1.5
4,120,028 - hslV b3932 0.47 -1.8
4,120,046 + hslV b3932 0.50 -1.6
4,120,046 + hslV b3932 0.50 -2.5
4,120,053 + hslV b3932 0.51 -2.3
4,120,055 + hslV b3932 0.52 -0.7
4,120,055 + hslV b3932 0.52 -1.2
4,120,057 + hslV b3932 0.52 +0.8
4,120,057 + hslV b3932 0.52 -1.3
4,120,076 + hslV b3932 0.56 -0.1
4,120,076 + hslV b3932 0.56 -1.0
4,120,087 + hslV b3932 0.58 -1.5
4,120,142 + hslV b3932 0.68 -0.2
4,120,142 + hslV b3932 0.68 -1.8
4,120,142 + hslV b3932 0.68 -2.7
4,120,155 - hslV b3932 0.71 -0.9
4,120,162 - hslV b3932 0.72 -0.5
4,120,162 - hslV b3932 0.72 +1.1
4,120,173 + hslV b3932 0.74 -1.4
4,120,210 + hslV b3932 0.81 -2.4
4,120,232 + hslV b3932 0.85 -3.3
4,120,232 + hslV b3932 0.85 -1.2
4,120,234 - hslV b3932 0.85 -0.9
4,120,242 - hslV b3932 0.87 -1.9
4,120,243 + hslV b3932 0.87 -1.4
4,120,243 + hslV b3932 0.87 -1.0
4,120,251 - hslV b3932 0.89 -1.9
4,120,256 - hslV b3932 0.90 -0.8
4,120,287 + -2.3
4,120,289 - -0.1
4,120,289 - -1.5
4,120,303 - -0.7
4,120,329 + -1.6
4,120,339 + -1.3
4,120,357 + -0.8
4,120,361 - +0.1
4,120,383 - -1.8
4,120,441 - +0.0
4,120,456 + -1.1
4,120,456 - -1.3
4,120,464 - -1.5
4,120,518 + ftsN b3933 0.12 -2.1
4,120,518 + ftsN b3933 0.12 -1.9
4,120,564 - ftsN b3933 0.17 -1.2
4,120,564 - ftsN b3933 0.17 -0.2
4,120,569 - ftsN b3933 0.17 -1.1
4,120,575 + ftsN b3933 0.18 -3.1
4,120,575 + ftsN b3933 0.18 +1.1
4,120,578 - ftsN b3933 0.18 -0.7
4,120,601 - ftsN b3933 0.21 -1.0
4,120,601 - ftsN b3933 0.21 -0.9
4,120,601 - ftsN b3933 0.21 -1.5
4,120,607 + ftsN b3933 0.21 -1.5
4,120,607 + ftsN b3933 0.21 -1.7
4,120,607 + ftsN b3933 0.21 -0.1
4,120,615 - ftsN b3933 0.22 -0.7
4,120,615 - ftsN b3933 0.22 +0.1
4,120,615 - ftsN b3933 0.22 +0.7
4,120,651 + ftsN b3933 0.26 -3.4
4,120,653 - ftsN b3933 0.26 -1.1
4,120,653 - ftsN b3933 0.26 -0.7
4,120,670 - ftsN b3933 0.28 -0.0
4,120,670 - ftsN b3933 0.28 -0.3
4,120,681 + ftsN b3933 0.29 -1.0
4,120,695 + ftsN b3933 0.30 -1.3
4,120,695 + ftsN b3933 0.30 -1.2
4,120,715 - ftsN b3933 0.33 -0.1
4,120,740 + ftsN b3933 0.35 -0.9
4,120,740 + ftsN b3933 0.35 +2.7
4,120,763 - ftsN b3933 0.38 -0.3
4,120,765 + ftsN b3933 0.38 -0.5
4,120,767 + ftsN b3933 0.38 -2.2
4,120,773 - ftsN b3933 0.39 -1.4
4,120,784 + ftsN b3933 0.40 -1.7
4,120,786 + ftsN b3933 0.40 -0.9
4,120,786 + ftsN b3933 0.40 +0.1
4,120,787 - ftsN b3933 0.40 -0.4
4,120,845 + ftsN b3933 0.46 -0.9
4,120,855 + ftsN b3933 0.47 -0.9
4,120,858 - ftsN b3933 0.47 -2.3
4,120,865 + ftsN b3933 0.48 +0.1
4,120,899 - ftsN b3933 0.52 -1.3
4,120,899 - ftsN b3933 0.52 -0.2
4,120,919 + ftsN b3933 0.54 +0.1
4,120,929 - ftsN b3933 0.55 +0.1
4,120,929 - ftsN b3933 0.55 +0.4
4,121,001 - ftsN b3933 0.62 -1.1
4,121,001 - ftsN b3933 0.62 -0.0

Or see this region's nucleotide sequence