Strain Fitness in Escherichia coli BW25113 around b2569

Experiment: LB Aerobic with Hygromycin B 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlepB and lepA are separated by 15 nucleotideslepA and rseC are separated by 197 nucleotidesrseC and rseB overlap by 4 nucleotides b2568: lepB - leader peptidase (signal peptidase I) (NCBI), at 2,702,357 to 2,703,331 lepB b2569: lepA - GTP-binding protein LepA (NCBI), at 2,703,347 to 2,705,146 lepA b2570: rseC - RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI), at 2,705,344 to 2,705,823 rseC b2571: rseB - periplasmic negative regulator of sigmaE (NCBI), at 2,705,820 to 2,706,776 rseB Position (kb) 2703 2704 2705 2706Strain fitness (log2 ratio) -2 -1 0 1at 2702.368 kb on + strandat 2702.368 kb on + strandat 2702.439 kb on - strandat 2702.448 kb on - strandat 2702.448 kb on - strandat 2703.342 kb on - strandat 2703.342 kb on - strandat 2703.413 kb on - strandat 2703.702 kb on - strand, within lepAat 2703.911 kb on - strand, within lepAat 2703.930 kb on - strand, within lepAat 2703.932 kb on - strand, within lepAat 2704.000 kb on - strand, within lepAat 2704.055 kb on + strand, within lepAat 2704.089 kb on + strand, within lepAat 2704.109 kb on - strand, within lepAat 2704.109 kb on - strand, within lepAat 2704.110 kb on - strand, within lepAat 2704.169 kb on + strand, within lepAat 2704.194 kb on - strand, within lepAat 2704.250 kb on - strand, within lepAat 2704.376 kb on - strand, within lepAat 2704.376 kb on - strand, within lepAat 2704.457 kb on - strand, within lepAat 2704.567 kb on - strand, within lepAat 2704.618 kb on - strand, within lepAat 2704.665 kb on - strand, within lepAat 2704.752 kb on + strand, within lepAat 2704.762 kb on - strand, within lepAat 2704.865 kb on - strand, within lepAat 2705.007 kb on - strandat 2705.209 kb on - strandat 2705.227 kb on - strandat 2705.227 kb on - strandat 2705.249 kb on - strandat 2705.259 kb on - strandat 2705.268 kb on + strandat 2705.500 kb on + strand, within rseCat 2705.500 kb on + strand, within rseCat 2705.554 kb on - strand, within rseCat 2705.594 kb on + strand, within rseCat 2705.652 kb on + strand, within rseCat 2705.652 kb on + strand, within rseCat 2705.662 kb on + strand, within rseCat 2705.662 kb on + strand, within rseCat 2705.673 kb on + strand, within rseCat 2705.699 kb on - strand, within rseCat 2705.699 kb on - strand, within rseCat 2705.760 kb on + strand, within rseCat 2705.761 kb on - strand, within rseCat 2705.761 kb on - strand, within rseCat 2705.783 kb on - strandat 2705.783 kb on - strandat 2705.814 kb on - strandat 2705.915 kb on + strandat 2705.915 kb on + strandat 2705.923 kb on - strand, within rseBat 2705.987 kb on - strand, within rseBat 2706.013 kb on + strand, within rseB

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Hygromycin B 0.000015625 mM
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2,702,368 + +0.1
2,702,368 + -0.7
2,702,439 - -0.5
2,702,448 - -1.0
2,702,448 - +0.5
2,703,342 - -1.4
2,703,342 - +1.3
2,703,413 - +0.0
2,703,702 - lepA b2569 0.20 -0.4
2,703,911 - lepA b2569 0.31 -0.0
2,703,930 - lepA b2569 0.32 +0.6
2,703,932 - lepA b2569 0.33 +0.6
2,704,000 - lepA b2569 0.36 -1.4
2,704,055 + lepA b2569 0.39 -0.4
2,704,089 + lepA b2569 0.41 +0.6
2,704,109 - lepA b2569 0.42 -1.0
2,704,109 - lepA b2569 0.42 +0.2
2,704,110 - lepA b2569 0.42 -0.4
2,704,169 + lepA b2569 0.46 +1.6
2,704,194 - lepA b2569 0.47 -1.0
2,704,250 - lepA b2569 0.50 +1.6
2,704,376 - lepA b2569 0.57 -0.4
2,704,376 - lepA b2569 0.57 -1.8
2,704,457 - lepA b2569 0.62 -0.4
2,704,567 - lepA b2569 0.68 -0.4
2,704,618 - lepA b2569 0.71 -0.8
2,704,665 - lepA b2569 0.73 -1.0
2,704,752 + lepA b2569 0.78 +0.6
2,704,762 - lepA b2569 0.79 -1.8
2,704,865 - lepA b2569 0.84 -0.4
2,705,007 - -2.3
2,705,209 - +0.6
2,705,227 - +1.3
2,705,227 - +0.8
2,705,249 - +0.3
2,705,259 - -0.5
2,705,268 + +1.4
2,705,500 + rseC b2570 0.33 +1.5
2,705,500 + rseC b2570 0.33 -1.8
2,705,554 - rseC b2570 0.44 +0.2
2,705,594 + rseC b2570 0.52 +0.1
2,705,652 + rseC b2570 0.64 +0.2
2,705,652 + rseC b2570 0.64 +0.2
2,705,662 + rseC b2570 0.66 +0.7
2,705,662 + rseC b2570 0.66 -0.5
2,705,673 + rseC b2570 0.69 -0.4
2,705,699 - rseC b2570 0.74 +0.9
2,705,699 - rseC b2570 0.74 -0.5
2,705,760 + rseC b2570 0.87 +0.1
2,705,761 - rseC b2570 0.87 -0.5
2,705,761 - rseC b2570 0.87 +0.2
2,705,783 - -1.0
2,705,783 - +0.5
2,705,814 - +0.3
2,705,915 + +0.8
2,705,915 + -0.0
2,705,923 - rseB b2571 0.11 +0.1
2,705,987 - rseB b2571 0.17 -0.8
2,706,013 + rseB b2571 0.20 +0.5

Or see this region's nucleotide sequence