Strain Fitness in Escherichia coli BW25113 around b1739

Experiment: LB Aerobic with Hygromycin B 0.000015625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntchbC and chbB are separated by 84 nucleotideschbB and osmE are separated by 298 nucleotidesosmE and nadE are separated by 201 nucleotides b1737: chbC - N,N'-diacetylchitobiose-specific enzyme IIC component of PTS (NCBI), at 1,817,880 to 1,819,238 chbC b1738: chbB - N,N'-diacetylchitobiose-specific enzyme IIB component of PTS (NCBI), at 1,819,323 to 1,819,643 chbB b1739: osmE - DNA-binding transcriptional activator (NCBI), at 1,819,942 to 1,820,280 osmE b1740: nadE - NAD synthetase (NCBI), at 1,820,482 to 1,821,309 nadE Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -1 0 1 2at 1818.975 kb on + strand, within chbCat 1819.023 kb on + strand, within chbCat 1819.024 kb on + strand, within chbCat 1819.115 kb on + strandat 1819.130 kb on - strandat 1819.130 kb on - strandat 1819.159 kb on + strandat 1819.368 kb on - strand, within chbBat 1819.368 kb on - strand, within chbBat 1819.368 kb on - strand, within chbBat 1819.368 kb on - strand, within chbBat 1819.368 kb on - strand, within chbBat 1819.370 kb on - strand, within chbBat 1819.378 kb on - strand, within chbBat 1819.378 kb on - strand, within chbBat 1819.378 kb on - strand, within chbBat 1819.379 kb on - strand, within chbBat 1819.442 kb on + strand, within chbBat 1819.595 kb on - strand, within chbBat 1819.595 kb on - strand, within chbBat 1819.709 kb on - strandat 1819.711 kb on - strandat 1819.711 kb on - strandat 1819.756 kb on - strandat 1819.758 kb on + strandat 1819.761 kb on - strandat 1819.773 kb on - strandat 1819.773 kb on - strandat 1819.773 kb on - strandat 1819.959 kb on + strandat 1819.981 kb on + strand, within osmEat 1819.996 kb on + strand, within osmEat 1820.033 kb on - strand, within osmEat 1820.215 kb on - strand, within osmE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Hygromycin B 0.000015625 mM
remove
1,818,975 + chbC b1737 0.81 +0.3
1,819,023 + chbC b1737 0.84 +1.3
1,819,024 + chbC b1737 0.84 +0.3
1,819,115 + -1.7
1,819,130 - +0.3
1,819,130 - +0.3
1,819,159 + +0.3
1,819,368 - chbB b1738 0.14 +0.9
1,819,368 - chbB b1738 0.14 -0.2
1,819,368 - chbB b1738 0.14 -1.1
1,819,368 - chbB b1738 0.14 +0.3
1,819,368 - chbB b1738 0.14 -0.1
1,819,370 - chbB b1738 0.15 -0.8
1,819,378 - chbB b1738 0.17 +0.9
1,819,378 - chbB b1738 0.17 +0.2
1,819,378 - chbB b1738 0.17 -0.1
1,819,379 - chbB b1738 0.17 +1.1
1,819,442 + chbB b1738 0.37 +0.3
1,819,595 - chbB b1738 0.85 +0.4
1,819,595 - chbB b1738 0.85 -1.5
1,819,709 - +0.1
1,819,711 - +0.7
1,819,711 - +0.3
1,819,756 - -0.2
1,819,758 + +1.9
1,819,761 - +0.1
1,819,773 - -0.7
1,819,773 - +0.3
1,819,773 - +1.6
1,819,959 + +0.3
1,819,981 + osmE b1739 0.12 -0.7
1,819,996 + osmE b1739 0.16 -0.7
1,820,033 - osmE b1739 0.27 -0.9
1,820,215 - osmE b1739 0.81 -0.7

Or see this region's nucleotide sequence