Strain Fitness in Escherichia coli BW25113 around b1536

Experiment: LB Aerobic with Hygromycin B 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeH and ydeI are separated by 254 nucleotidesydeI and ydeJ are separated by 275 nucleotidesydeJ and dcp are separated by 43 nucleotides b1535: ydeH - hypothetical protein (NCBI), at 1,620,984 to 1,621,874 ydeH b1536: ydeI - hypothetical protein (NCBI), at 1,622,129 to 1,622,521 ydeI b1537: ydeJ - competence damage-inducible protein A (NCBI), at 1,622,797 to 1,623,315 ydeJ b1538: dcp - dipeptidyl carboxypeptidase II (NCBI), at 1,623,359 to 1,625,404 dcp Position (kb) 1622 1623Strain fitness (log2 ratio) -1 0 1 2at 1621.207 kb on - strand, within ydeHat 1621.207 kb on - strand, within ydeHat 1621.215 kb on - strand, within ydeHat 1621.304 kb on - strand, within ydeHat 1621.307 kb on + strand, within ydeHat 1621.315 kb on - strand, within ydeHat 1621.317 kb on + strand, within ydeHat 1621.320 kb on + strand, within ydeHat 1621.323 kb on - strand, within ydeHat 1621.325 kb on - strand, within ydeHat 1621.416 kb on - strand, within ydeHat 1621.439 kb on - strand, within ydeHat 1621.459 kb on - strand, within ydeHat 1621.685 kb on - strand, within ydeHat 1621.685 kb on - strand, within ydeHat 1621.691 kb on - strand, within ydeHat 1621.714 kb on + strand, within ydeHat 1621.722 kb on - strand, within ydeHat 1621.724 kb on + strand, within ydeHat 1621.724 kb on + strand, within ydeHat 1621.724 kb on + strand, within ydeHat 1621.724 kb on + strand, within ydeHat 1621.726 kb on + strand, within ydeHat 1621.732 kb on - strand, within ydeHat 1621.732 kb on - strand, within ydeHat 1621.761 kb on - strand, within ydeHat 1621.761 kb on - strand, within ydeHat 1621.789 kb on + strandat 1621.799 kb on + strandat 1621.799 kb on + strandat 1621.799 kb on + strandat 1621.799 kb on + strandat 1621.803 kb on + strandat 1621.811 kb on - strandat 1621.813 kb on - strandat 1621.917 kb on - strandat 1621.961 kb on + strandat 1621.973 kb on + strandat 1622.143 kb on - strandat 1622.227 kb on + strand, within ydeIat 1622.299 kb on - strand, within ydeIat 1622.299 kb on - strand, within ydeIat 1622.405 kb on - strand, within ydeIat 1622.405 kb on - strand, within ydeIat 1622.409 kb on + strand, within ydeIat 1622.409 kb on + strand, within ydeIat 1622.420 kb on + strand, within ydeIat 1622.420 kb on + strand, within ydeIat 1622.420 kb on + strand, within ydeIat 1622.471 kb on - strand, within ydeIat 1622.527 kb on + strandat 1622.774 kb on - strandat 1622.834 kb on + strandat 1622.835 kb on - strandat 1622.838 kb on - strandat 1622.868 kb on + strand, within ydeJat 1622.868 kb on + strand, within ydeJat 1622.934 kb on + strand, within ydeJat 1622.983 kb on + strand, within ydeJat 1622.987 kb on + strand, within ydeJat 1623.043 kb on + strand, within ydeJat 1623.097 kb on + strand, within ydeJat 1623.097 kb on + strand, within ydeJat 1623.170 kb on + strand, within ydeJat 1623.211 kb on + strand, within ydeJat 1623.259 kb on + strand, within ydeJat 1623.259 kb on + strand, within ydeJat 1623.297 kb on + strandat 1623.297 kb on + strandat 1623.309 kb on - strandat 1623.309 kb on - strandat 1623.411 kb on - strandat 1623.449 kb on + strandat 1623.449 kb on + strandat 1623.501 kb on + strandat 1623.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Hygromycin B 0.000015625 mM
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1,621,207 - ydeH b1535 0.25 +2.6
1,621,207 - ydeH b1535 0.25 +1.8
1,621,215 - ydeH b1535 0.26 +0.7
1,621,304 - ydeH b1535 0.36 +0.3
1,621,307 + ydeH b1535 0.36 +0.3
1,621,315 - ydeH b1535 0.37 -0.7
1,621,317 + ydeH b1535 0.37 +0.3
1,621,320 + ydeH b1535 0.38 +0.3
1,621,323 - ydeH b1535 0.38 -0.7
1,621,325 - ydeH b1535 0.38 -1.3
1,621,416 - ydeH b1535 0.48 -1.0
1,621,439 - ydeH b1535 0.51 +0.5
1,621,459 - ydeH b1535 0.53 +0.8
1,621,685 - ydeH b1535 0.79 +0.3
1,621,685 - ydeH b1535 0.79 +1.3
1,621,691 - ydeH b1535 0.79 +0.3
1,621,714 + ydeH b1535 0.82 +0.3
1,621,722 - ydeH b1535 0.83 +0.3
1,621,724 + ydeH b1535 0.83 -0.7
1,621,724 + ydeH b1535 0.83 +0.3
1,621,724 + ydeH b1535 0.83 +0.3
1,621,724 + ydeH b1535 0.83 -0.7
1,621,726 + ydeH b1535 0.83 -1.3
1,621,732 - ydeH b1535 0.84 +0.3
1,621,732 - ydeH b1535 0.84 +0.3
1,621,761 - ydeH b1535 0.87 +1.3
1,621,761 - ydeH b1535 0.87 -0.3
1,621,789 + -0.7
1,621,799 + +0.3
1,621,799 + +0.3
1,621,799 + +0.3
1,621,799 + +0.3
1,621,803 + +0.3
1,621,811 - +0.3
1,621,813 - +0.3
1,621,917 - +0.3
1,621,961 + +0.3
1,621,973 + +0.3
1,622,143 - -1.3
1,622,227 + ydeI b1536 0.25 +0.3
1,622,299 - ydeI b1536 0.43 +0.3
1,622,299 - ydeI b1536 0.43 -0.7
1,622,405 - ydeI b1536 0.70 -0.7
1,622,405 - ydeI b1536 0.70 -1.3
1,622,409 + ydeI b1536 0.71 +0.3
1,622,409 + ydeI b1536 0.71 +0.3
1,622,420 + ydeI b1536 0.74 +0.3
1,622,420 + ydeI b1536 0.74 +0.3
1,622,420 + ydeI b1536 0.74 +0.3
1,622,471 - ydeI b1536 0.87 +0.3
1,622,527 + +0.3
1,622,774 - -1.3
1,622,834 + +0.3
1,622,835 - -0.3
1,622,838 - +1.8
1,622,868 + ydeJ b1537 0.14 +0.3
1,622,868 + ydeJ b1537 0.14 +0.3
1,622,934 + ydeJ b1537 0.26 +0.3
1,622,983 + ydeJ b1537 0.36 +0.3
1,622,987 + ydeJ b1537 0.37 -0.2
1,623,043 + ydeJ b1537 0.47 -0.1
1,623,097 + ydeJ b1537 0.58 -0.3
1,623,097 + ydeJ b1537 0.58 +1.5
1,623,170 + ydeJ b1537 0.72 -0.2
1,623,211 + ydeJ b1537 0.80 +0.9
1,623,259 + ydeJ b1537 0.89 -0.5
1,623,259 + ydeJ b1537 0.89 +0.6
1,623,297 + -0.7
1,623,297 + -0.6
1,623,309 - -0.7
1,623,309 - -0.3
1,623,411 - -0.4
1,623,449 + -0.1
1,623,449 + -0.0
1,623,501 + +0.7
1,623,519 - -0.7

Or see this region's nucleotide sequence