Strain Fitness in Escherichia coli BW25113 around b0297

Experiment: LB Aerobic with Hygromycin B 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntykgP and eaeH are separated by 551 nucleotideseaeH and insE are separated by 62 nucleotidesinsE and insF-1 overlap by 4 nucleotides b4630: ykgP - no description, at 312,940 to 313,029 ykgP b0297: eaeH - attaching and effacing protein, pathogenesis factor (RefSeq), at 313,581 to 314,452 eaeH b0298: insE - IS3 element protein InsE (RefSeq), at 314,515 to 314,814 insE b0299: insF-1 - IS3 element protein InsF (NCBI), at 314,811 to 315,677 insF-1 Position (kb) 313 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1at 312.586 kb on + strandat 312.596 kb on + strandat 312.605 kb on + strandat 312.615 kb on - strandat 312.619 kb on + strandat 312.642 kb on - strandat 312.648 kb on + strandat 312.648 kb on + strandat 312.650 kb on + strandat 312.658 kb on - strandat 312.660 kb on + strandat 312.660 kb on + strandat 312.664 kb on + strandat 312.666 kb on + strandat 312.672 kb on - strandat 312.674 kb on - strandat 312.677 kb on + strandat 312.679 kb on - strandat 312.679 kb on - strandat 312.690 kb on - strandat 312.690 kb on - strandat 312.693 kb on - strandat 312.695 kb on + strandat 312.712 kb on - strandat 312.721 kb on + strandat 312.721 kb on + strandat 312.721 kb on + strandat 312.729 kb on + strandat 312.731 kb on - strandat 312.743 kb on + strandat 312.766 kb on + strandat 312.784 kb on + strandat 312.785 kb on - strandat 312.800 kb on + strandat 312.800 kb on + strandat 312.800 kb on + strandat 312.802 kb on + strandat 312.805 kb on + strandat 312.810 kb on + strandat 312.816 kb on + strandat 312.818 kb on + strandat 312.822 kb on + strandat 312.822 kb on + strandat 312.829 kb on + strandat 312.831 kb on + strandat 312.831 kb on + strandat 312.837 kb on - strandat 312.837 kb on - strandat 312.839 kb on - strandat 312.841 kb on - strandat 312.841 kb on - strandat 312.841 kb on - strandat 312.854 kb on - strandat 312.854 kb on - strandat 312.968 kb on - strand, within ykgPat 312.973 kb on - strand, within ykgPat 312.973 kb on - strand, within ykgPat 313.025 kb on + strandat 313.078 kb on - strandat 313.120 kb on + strandat 313.126 kb on + strandat 313.131 kb on + strandat 313.136 kb on - strandat 313.141 kb on + strandat 313.231 kb on - strandat 313.451 kb on - strandat 313.597 kb on - strandat 313.597 kb on - strandat 313.597 kb on - strandat 313.600 kb on - strandat 313.600 kb on - strandat 313.637 kb on - strandat 313.637 kb on - strandat 313.660 kb on + strandat 313.695 kb on - strand, within eaeHat 313.697 kb on - strand, within eaeHat 313.704 kb on + strand, within eaeHat 313.716 kb on + strand, within eaeHat 313.725 kb on + strand, within eaeHat 313.726 kb on + strand, within eaeHat 313.732 kb on - strand, within eaeHat 313.735 kb on + strand, within eaeHat 313.735 kb on + strand, within eaeHat 313.735 kb on + strand, within eaeHat 313.735 kb on + strand, within eaeHat 313.768 kb on + strand, within eaeHat 313.841 kb on + strand, within eaeHat 314.025 kb on - strand, within eaeHat 314.040 kb on - strand, within eaeHat 314.053 kb on - strand, within eaeHat 314.157 kb on + strand, within eaeHat 314.157 kb on + strand, within eaeHat 314.166 kb on - strand, within eaeHat 314.166 kb on - strand, within eaeHat 314.169 kb on - strand, within eaeHat 314.223 kb on - strand, within eaeHat 314.223 kb on - strand, within eaeHat 314.229 kb on - strand, within eaeHat 314.265 kb on - strand, within eaeHat 314.276 kb on - strand, within eaeHat 314.297 kb on + strand, within eaeHat 314.297 kb on + strand, within eaeHat 314.324 kb on - strand, within eaeHat 314.341 kb on - strand, within eaeHat 314.356 kb on - strand, within eaeHat 314.358 kb on - strand, within eaeHat 314.358 kb on - strand, within eaeHat 314.358 kb on - strand, within eaeHat 314.360 kb on + strand, within eaeHat 314.368 kb on - strandat 314.384 kb on + strandat 314.384 kb on + strandat 314.392 kb on - strandat 314.401 kb on - strandat 314.407 kb on - strandat 314.437 kb on + strandat 314.437 kb on + strandat 314.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Hygromycin B 0.000015625 mM
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312,586 + -0.3
312,596 + +1.3
312,605 + -0.3
312,615 - -2.1
312,619 + +0.7
312,642 - -0.3
312,648 + -1.8
312,648 + -0.3
312,650 + +0.7
312,658 - +0.7
312,660 + -0.8
312,660 + +0.0
312,664 + -1.6
312,666 + -1.3
312,672 - +1.7
312,674 - -1.3
312,677 + -0.1
312,679 - +0.7
312,679 - +1.1
312,690 - +0.7
312,690 - +0.7
312,693 - +0.7
312,695 + +0.4
312,712 - -0.3
312,721 + +0.2
312,721 + +0.0
312,721 + -1.6
312,729 + +0.7
312,731 - +0.7
312,743 + +0.7
312,766 + +0.7
312,784 + -0.8
312,785 - +0.7
312,800 + -0.8
312,800 + -0.3
312,800 + +0.7
312,802 + -1.1
312,805 + +0.7
312,810 + +0.7
312,816 + +0.7
312,818 + +0.7
312,822 + +0.7
312,822 + +0.7
312,829 + +0.7
312,831 + +0.7
312,831 + +0.7
312,837 - +0.7
312,837 - -1.8
312,839 - +0.7
312,841 - +0.7
312,841 - +0.7
312,841 - -0.3
312,854 - +0.7
312,854 - +0.7
312,968 - ykgP b4630 0.31 +0.1
312,973 - ykgP b4630 0.37 +0.2
312,973 - ykgP b4630 0.37 -0.6
313,025 + +1.7
313,078 - -0.6
313,120 + +0.7
313,126 + +0.7
313,131 + +0.7
313,136 - -0.3
313,141 + +0.7
313,231 - -1.3
313,451 - +0.7
313,597 - -0.3
313,597 - +0.7
313,597 - -1.3
313,600 - -0.3
313,600 - +0.1
313,637 - -0.9
313,637 - -0.6
313,660 + +0.7
313,695 - eaeH b0297 0.13 +0.7
313,697 - eaeH b0297 0.13 -1.5
313,704 + eaeH b0297 0.14 +0.7
313,716 + eaeH b0297 0.15 -0.9
313,725 + eaeH b0297 0.17 +0.7
313,726 + eaeH b0297 0.17 +0.7
313,732 - eaeH b0297 0.17 -0.3
313,735 + eaeH b0297 0.18 +0.7
313,735 + eaeH b0297 0.18 -0.9
313,735 + eaeH b0297 0.18 -0.3
313,735 + eaeH b0297 0.18 -0.3
313,768 + eaeH b0297 0.21 -2.4
313,841 + eaeH b0297 0.30 +0.7
314,025 - eaeH b0297 0.51 -0.3
314,040 - eaeH b0297 0.53 -0.9
314,053 - eaeH b0297 0.54 -2.9
314,157 + eaeH b0297 0.66 +0.7
314,157 + eaeH b0297 0.66 +0.7
314,166 - eaeH b0297 0.67 +0.1
314,166 - eaeH b0297 0.67 -0.5
314,169 - eaeH b0297 0.67 -0.3
314,223 - eaeH b0297 0.74 +0.7
314,223 - eaeH b0297 0.74 +1.7
314,229 - eaeH b0297 0.74 -0.3
314,265 - eaeH b0297 0.78 -0.3
314,276 - eaeH b0297 0.80 -1.5
314,297 + eaeH b0297 0.82 -0.3
314,297 + eaeH b0297 0.82 -0.3
314,324 - eaeH b0297 0.85 -0.1
314,341 - eaeH b0297 0.87 -0.6
314,356 - eaeH b0297 0.89 +0.5
314,358 - eaeH b0297 0.89 -0.3
314,358 - eaeH b0297 0.89 +0.7
314,358 - eaeH b0297 0.89 +0.1
314,360 + eaeH b0297 0.89 +1.3
314,368 - -1.1
314,384 + -0.6
314,384 + +1.3
314,392 - -1.1
314,401 - -1.0
314,407 - -0.4
314,437 + -0.3
314,437 + +0.7
314,507 - +0.7

Or see this region's nucleotide sequence