Strain Fitness in Pseudomonas putida KT2440 around PP_3409

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
3,857,833	-				+0.6
3,857,924	-				+1.7
3,857,968	-				-0.1
3,857,968	-				-0.0
3,858,052	+				-0.6
3,858,495	-		PP_3408	0.63	-0.2
3,858,592	+		PP_3408	0.77	-0.6
3,858,592	+		PP_3408	0.77	-0.5
3,858,592	+		PP_3408	0.77	+1.7
3,858,593	-		PP_3408	0.78	+0.0
3,858,758	+				-1.2
3,858,759	-				+0.8
3,858,797	-		PP_3409	0.14	-0.7
3,858,942	-		PP_3409	0.51	+1.1
3,858,942	-		PP_3409	0.51	-0.9
3,858,965	+		PP_3409	0.57	+2.7
3,858,965	+		PP_3409	0.57	-2.7
3,858,966	-		PP_3409	0.57	-1.4
3,859,098	+				+0.8
3,859,176	+				+0.1
3,859,176	+				-0.4
3,859,177	-				-1.0
3,859,177	-				+0.5
3,859,177	-				-0.3
3,859,423	-		PP_3410	0.34	+0.7
3,859,835	-		PP_3410	0.89	+1.1
3,859,853	+				-0.5
3,859,853	+				+0.4
3,859,878	+				+0.3
3,859,878	+				-0.6
3,859,878	+				-1.2
3,859,878	+				-1.0
3,859,879	-				+0.1
3,859,996	+				+0.0