Strain Fitness in Pseudomonas putida KT2440 around PP_2846

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
3,249,196	+		PP_2845	0.48	-0.5
3,249,291	-		PP_2845	0.53	+0.4
3,249,291	-		PP_2845	0.53	-0.6
3,249,560	+		PP_2845	0.69	+0.8
3,249,588	-		PP_2845	0.71	-1.6
3,249,599	+		PP_2845	0.71	-0.1
3,249,600	-		PP_2845	0.72	+0.4
3,249,798	-		PP_2845	0.83	+0.4
3,249,940	-				+0.4
3,250,001	+				-0.2
3,250,002	-				+0.6
3,250,114	+				+0.5
3,250,114	+				+0.4
3,250,114	+				-4.7
3,250,115	-				-0.4
3,250,117	-				+0.4
3,250,473	+		PP_2846	0.75	-0.3
3,250,473	+		PP_2846	0.75	-0.2
3,250,473	+		PP_2846	0.75	-0.8
3,250,515	-		PP_2846	0.84	-3.4
3,250,575	+				-0.3
3,250,990	-		PP_2847	0.68	+0.4
3,250,990	-		PP_2847	0.68	-1.5
3,251,229	+		PP_2848	0.10	-0.7
3,251,230	-		PP_2848	0.10	-0.1
3,251,362	+		PP_2848	0.30	-1.3
3,251,379	+				+1.2