Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2659 and PP_2660 are separated by 94 nucleotides PP_2660 and PP_2661 overlap by 1 nucleotides PP_2661 and PP_2662 are separated by 295 nucleotides
PP_2659: PP_2659 - phosphate ABC transporter ATP-binding protein, at 3,046,314 to 3,047,153
_2659
PP_2660: PP_2660 - conserved protein of unknown function, at 3,047,248 to 3,047,946
_2660
PP_2661: PP_2661 - conserved protein of unknown function, at 3,047,946 to 3,048,545
_2661
PP_2662: PP_2662 - conserved exported protein of unknown function, at 3,048,841 to 3,050,028
_2662
Position (kb)
3047
3048
3049 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3046.962 kb on + strand, within PP_2659 at 3046.963 kb on - strand, within PP_2659 at 3046.963 kb on - strand, within PP_2659 at 3046.986 kb on - strand, within PP_2659 at 3047.040 kb on - strand, within PP_2659 at 3047.065 kb on - strand, within PP_2659 at 3047.215 kb on + strand at 3047.225 kb on + strand at 3047.243 kb on + strand at 3047.244 kb on - strand at 3047.393 kb on - strand, within PP_2660 at 3047.393 kb on - strand, within PP_2660 at 3047.410 kb on + strand, within PP_2660 at 3047.410 kb on + strand, within PP_2660 at 3047.410 kb on + strand, within PP_2660 at 3047.411 kb on - strand, within PP_2660 at 3047.484 kb on - strand, within PP_2660 at 3047.484 kb on - strand, within PP_2660 at 3047.484 kb on - strand, within PP_2660 at 3047.584 kb on + strand, within PP_2660 at 3047.584 kb on + strand, within PP_2660 at 3047.593 kb on + strand, within PP_2660 at 3047.641 kb on + strand, within PP_2660 at 3047.641 kb on + strand at 3047.641 kb on + strand, within PP_2660 at 3047.641 kb on + strand, within PP_2660 at 3047.642 kb on - strand, within PP_2660 at 3047.642 kb on - strand, within PP_2660 at 3047.642 kb on - strand, within PP_2660 at 3047.642 kb on - strand, within PP_2660 at 3047.642 kb on - strand, within PP_2660 at 3047.642 kb on - strand, within PP_2660 at 3047.645 kb on + strand, within PP_2660 at 3047.645 kb on + strand, within PP_2660 at 3047.645 kb on + strand, within PP_2660 at 3047.645 kb on + strand, within PP_2660 at 3047.646 kb on - strand, within PP_2660 at 3047.703 kb on + strand, within PP_2660 at 3047.704 kb on - strand, within PP_2660 at 3047.704 kb on - strand, within PP_2660 at 3047.714 kb on - strand, within PP_2660 at 3047.773 kb on + strand, within PP_2660 at 3047.795 kb on + strand, within PP_2660 at 3047.796 kb on - strand, within PP_2660 at 3047.830 kb on + strand, within PP_2660 at 3048.183 kb on + strand, within PP_2661 at 3048.184 kb on - strand, within PP_2661 at 3048.184 kb on - strand, within PP_2661 at 3048.353 kb on - strand, within PP_2661 at 3048.353 kb on - strand, within PP_2661 at 3048.353 kb on - strand, within PP_2661 at 3048.353 kb on - strand, within PP_2661 at 3048.567 kb on + strand at 3048.567 kb on + strand at 3048.568 kb on - strand at 3048.568 kb on - strand at 3048.572 kb on + strand at 3048.572 kb on + strand at 3048.572 kb on + strand at 3048.572 kb on + strand at 3048.572 kb on + strand at 3048.647 kb on + strand at 3048.647 kb on + strand at 3048.648 kb on - strand at 3048.648 kb on - strand at 3048.648 kb on - strand at 3048.681 kb on + strand at 3048.681 kb on + strand at 3048.681 kb on + strand at 3048.682 kb on - strand at 3048.855 kb on + strand at 3048.855 kb on + strand at 3048.856 kb on - strand at 3048.856 kb on - strand at 3048.947 kb on - strand at 3048.983 kb on - strand, within PP_2662 at 3048.983 kb on - strand, within PP_2662 at 3048.984 kb on + strand, within PP_2662 at 3048.997 kb on + strand, within PP_2662 at 3048.997 kb on + strand, within PP_2662 at 3048.998 kb on - strand, within PP_2662 at 3049.078 kb on + strand, within PP_2662 at 3049.078 kb on + strand, within PP_2662 at 3049.078 kb on + strand, within PP_2662 at 3049.079 kb on - strand, within PP_2662 at 3049.079 kb on - strand, within PP_2662 at 3049.079 kb on - strand, within PP_2662 at 3049.079 kb on - strand, within PP_2662 at 3049.079 kb on - strand, within PP_2662 at 3049.205 kb on - strand, within PP_2662 at 3049.396 kb on - strand, within PP_2662 at 3049.411 kb on + strand, within PP_2662 at 3049.412 kb on - strand, within PP_2662 at 3049.412 kb on - strand, within PP_2662 at 3049.436 kb on + strand, within PP_2662 at 3049.437 kb on - strand, within PP_2662 at 3049.537 kb on + strand, within PP_2662
Per-strain Table
Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. remove 3,046,962 + PP_2659 0.77 -0.9 3,046,963 - PP_2659 0.77 +0.0 3,046,963 - PP_2659 0.77 -0.3 3,046,986 - PP_2659 0.80 -0.3 3,047,040 - PP_2659 0.86 +0.2 3,047,065 - PP_2659 0.89 +0.5 3,047,215 + -0.6 3,047,225 + -0.7 3,047,243 + -0.7 3,047,244 - -1.8 3,047,393 - PP_2660 0.21 +0.2 3,047,393 - PP_2660 0.21 -0.1 3,047,410 + PP_2660 0.23 -0.3 3,047,410 + PP_2660 0.23 +0.2 3,047,410 + PP_2660 0.23 +0.0 3,047,411 - PP_2660 0.23 +0.3 3,047,484 - PP_2660 0.34 +0.0 3,047,484 - PP_2660 0.34 +1.0 3,047,484 - PP_2660 0.34 -0.3 3,047,584 + PP_2660 0.48 -0.1 3,047,584 + PP_2660 0.48 +0.9 3,047,593 + PP_2660 0.49 +0.4 3,047,641 + PP_2660 0.56 -0.4 3,047,641 + +1.4 3,047,641 + PP_2660 0.56 +0.1 3,047,641 + PP_2660 0.56 +0.3 3,047,642 - PP_2660 0.56 +0.1 3,047,642 - PP_2660 0.56 -0.1 3,047,642 - PP_2660 0.56 -0.9 3,047,642 - PP_2660 0.56 +0.1 3,047,642 - PP_2660 0.56 -0.4 3,047,642 - PP_2660 0.56 -1.3 3,047,645 + PP_2660 0.57 +1.3 3,047,645 + PP_2660 0.57 +0.0 3,047,645 + PP_2660 0.57 +0.2 3,047,645 + PP_2660 0.57 -1.0 3,047,646 - PP_2660 0.57 -0.2 3,047,703 + PP_2660 0.65 -0.1 3,047,704 - PP_2660 0.65 +0.3 3,047,704 - PP_2660 0.65 +0.3 3,047,714 - PP_2660 0.67 -0.4 3,047,773 + PP_2660 0.75 +0.3 3,047,795 + PP_2660 0.78 +0.4 3,047,796 - PP_2660 0.78 -1.4 3,047,830 + PP_2660 0.83 +0.7 3,048,183 + PP_2661 0.40 -1.8 3,048,184 - PP_2661 0.40 +2.7 3,048,184 - PP_2661 0.40 -0.2 3,048,353 - PP_2661 0.68 -1.3 3,048,353 - PP_2661 0.68 -0.9 3,048,353 - PP_2661 0.68 -1.8 3,048,353 - PP_2661 0.68 +1.2 3,048,567 + -0.2 3,048,567 + -0.5 3,048,568 - -0.7 3,048,568 - +0.1 3,048,572 + +0.3 3,048,572 + +0.2 3,048,572 + +0.7 3,048,572 + +1.7 3,048,572 + +0.2 3,048,647 + +0.3 3,048,647 + +0.2 3,048,648 - +0.0 3,048,648 - -0.1 3,048,648 - +0.4 3,048,681 + -0.1 3,048,681 + +0.7 3,048,681 + +1.7 3,048,682 - +2.7 3,048,855 + -0.8 3,048,855 + +0.2 3,048,856 - +0.5 3,048,856 - +0.7 3,048,947 - -1.4 3,048,983 - PP_2662 0.12 +0.9 3,048,983 - PP_2662 0.12 +0.1 3,048,984 + PP_2662 0.12 -0.3 3,048,997 + PP_2662 0.13 +0.1 3,048,997 + PP_2662 0.13 +0.7 3,048,998 - PP_2662 0.13 +0.6 3,049,078 + PP_2662 0.20 -0.8 3,049,078 + PP_2662 0.20 -0.1 3,049,078 + PP_2662 0.20 -0.1 3,049,079 - PP_2662 0.20 +0.0 3,049,079 - PP_2662 0.20 -0.8 3,049,079 - PP_2662 0.20 +0.5 3,049,079 - PP_2662 0.20 +0.6 3,049,079 - PP_2662 0.20 -0.7 3,049,205 - PP_2662 0.31 -1.1 3,049,396 - PP_2662 0.47 +0.2 3,049,411 + PP_2662 0.48 -0.0 3,049,412 - PP_2662 0.48 +0.0 3,049,412 - PP_2662 0.48 +0.7 3,049,436 + PP_2662 0.50 -0.4 3,049,437 - PP_2662 0.50 -0.5 3,049,537 + PP_2662 0.59 +0.6
Or see this region's nucleotide sequence