Strain Fitness in Pseudomonas putida KT2440 around PP_2661

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
3,046,962	+		PP_2659	0.77	-0.9
3,046,963	-		PP_2659	0.77	+0.0
3,046,963	-		PP_2659	0.77	-0.3
3,046,986	-		PP_2659	0.80	-0.3
3,047,040	-		PP_2659	0.86	+0.2
3,047,065	-		PP_2659	0.89	+0.5
3,047,215	+				-0.6
3,047,225	+				-0.7
3,047,243	+				-0.7
3,047,244	-				-1.8
3,047,393	-		PP_2660	0.21	+0.2
3,047,393	-		PP_2660	0.21	-0.1
3,047,410	+		PP_2660	0.23	-0.3
3,047,410	+		PP_2660	0.23	+0.2
3,047,410	+		PP_2660	0.23	+0.0
3,047,411	-		PP_2660	0.23	+0.3
3,047,484	-		PP_2660	0.34	+0.0
3,047,484	-		PP_2660	0.34	+1.0
3,047,484	-		PP_2660	0.34	-0.3
3,047,584	+		PP_2660	0.48	-0.1
3,047,584	+		PP_2660	0.48	+0.9
3,047,593	+		PP_2660	0.49	+0.4
3,047,641	+		PP_2660	0.56	-0.4
3,047,641	+				+1.4
3,047,641	+		PP_2660	0.56	+0.1
3,047,641	+		PP_2660	0.56	+0.3
3,047,642	-		PP_2660	0.56	+0.1
3,047,642	-		PP_2660	0.56	-0.1
3,047,642	-		PP_2660	0.56	-0.9
3,047,642	-		PP_2660	0.56	+0.1
3,047,642	-		PP_2660	0.56	-0.4
3,047,642	-		PP_2660	0.56	-1.3
3,047,645	+		PP_2660	0.57	+1.3
3,047,645	+		PP_2660	0.57	+0.0
3,047,645	+		PP_2660	0.57	+0.2
3,047,645	+		PP_2660	0.57	-1.0
3,047,646	-		PP_2660	0.57	-0.2
3,047,703	+		PP_2660	0.65	-0.1
3,047,704	-		PP_2660	0.65	+0.3
3,047,704	-		PP_2660	0.65	+0.3
3,047,714	-		PP_2660	0.67	-0.4
3,047,773	+		PP_2660	0.75	+0.3
3,047,795	+		PP_2660	0.78	+0.4
3,047,796	-		PP_2660	0.78	-1.4
3,047,830	+		PP_2660	0.83	+0.7
3,048,183	+		PP_2661	0.40	-1.8
3,048,184	-		PP_2661	0.40	+2.7
3,048,184	-		PP_2661	0.40	-0.2
3,048,353	-		PP_2661	0.68	-1.3
3,048,353	-		PP_2661	0.68	-0.9
3,048,353	-		PP_2661	0.68	-1.8
3,048,353	-		PP_2661	0.68	+1.2
3,048,567	+				-0.2
3,048,567	+				-0.5
3,048,568	-				-0.7
3,048,568	-				+0.1
3,048,572	+				+0.3
3,048,572	+				+0.2
3,048,572	+				+0.7
3,048,572	+				+1.7
3,048,572	+				+0.2
3,048,647	+				+0.3
3,048,647	+				+0.2
3,048,648	-				+0.0
3,048,648	-				-0.1
3,048,648	-				+0.4
3,048,681	+				-0.1
3,048,681	+				+0.7
3,048,681	+				+1.7
3,048,682	-				+2.7
3,048,855	+				-0.8
3,048,855	+				+0.2
3,048,856	-				+0.5
3,048,856	-				+0.7
3,048,947	-				-1.4
3,048,983	-		PP_2662	0.12	+0.9
3,048,983	-		PP_2662	0.12	+0.1
3,048,984	+		PP_2662	0.12	-0.3
3,048,997	+		PP_2662	0.13	+0.1
3,048,997	+		PP_2662	0.13	+0.7
3,048,998	-		PP_2662	0.13	+0.6
3,049,078	+		PP_2662	0.20	-0.8
3,049,078	+		PP_2662	0.20	-0.1
3,049,078	+		PP_2662	0.20	-0.1
3,049,079	-		PP_2662	0.20	+0.0
3,049,079	-		PP_2662	0.20	-0.8
3,049,079	-		PP_2662	0.20	+0.5
3,049,079	-		PP_2662	0.20	+0.6
3,049,079	-		PP_2662	0.20	-0.7
3,049,205	-		PP_2662	0.31	-1.1
3,049,396	-		PP_2662	0.47	+0.2
3,049,411	+		PP_2662	0.48	-0.0
3,049,412	-		PP_2662	0.48	+0.0
3,049,412	-		PP_2662	0.48	+0.7
3,049,436	+		PP_2662	0.50	-0.4
3,049,437	-		PP_2662	0.50	-0.5
3,049,537	+		PP_2662	0.59	+0.6