Strain Fitness in Pseudomonas putida KT2440 around PP_2203

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
2,507,713	+		PP_2201	0.54	+0.1
2,507,714	-		PP_2201	0.54	-0.7
2,507,833	+		PP_2201	0.66	+0.8
2,508,013	+		PP_2201	0.84	+0.7
2,508,100	+				-0.6
2,508,100	+				-0.3
2,508,100	+				-0.4
2,508,276	-				-0.7
2,508,276	-				-0.3
2,508,559	-		PP_2202	0.71	-1.5
2,508,676	-				-1.1
2,508,690	+				+0.7
2,508,690	+				-1.2
2,508,691	-				+0.6
2,508,691	-				-1.7
2,508,691	-				+0.6
2,508,741	+		PP_2203	0.13	+1.7
2,508,741	+		PP_2203	0.13	+0.7
2,508,741	+		PP_2203	0.13	-1.8
2,509,131	-				-0.9
2,509,241	+		PP_2204	0.13	-0.8
2,509,242	-		PP_2204	0.13	-1.1
2,509,269	-		PP_2204	0.16	-1.8
2,509,340	+		PP_2204	0.24	-0.3
2,509,369	+		PP_2204	0.27	+0.4
2,509,392	+		PP_2204	0.30	+1.4
2,509,393	-		PP_2204	0.30	+0.8
2,509,397	+		PP_2204	0.30	-0.2
2,509,442	+		PP_2204	0.35	-0.7
2,509,657	-		PP_2204	0.60	+0.4