Strain Fitness in Pseudomonas putida KT2440 around PP_1829

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
2,052,772	-				+0.1
2,052,881	-				+0.4
2,052,915	+		PP_1828	0.12	+0.8
2,052,915	+		PP_1828	0.12	-1.0
2,053,075	+		PP_1828	0.33	-0.8
2,053,434	+		PP_1828	0.79	+0.2
2,053,435	-		PP_1828	0.79	+0.3
2,053,502	+		PP_1828	0.87	-0.2
2,053,618	+				-0.4
2,053,618	+				+0.3
2,053,619	-				-1.7
2,053,619	-				+1.7
2,053,619	-				-0.1
2,053,619	-				-0.8
2,053,619	-				+0.1
2,053,745	+				+1.1
2,053,746	-				+0.7
2,053,746	-				+0.5
2,053,746	-				-0.1
2,053,746	-				+0.4
2,054,276	+		PP_1829	0.64	-1.4
2,054,276	+		PP_1829	0.64	-2.1
2,054,277	-		PP_1829	0.64	+0.1
2,054,557	+				+0.7
2,054,558	-				+1.4
2,054,558	-				+0.8
2,054,558	-				-0.3
2,054,634	-				+1.3
2,054,636	+				+0.2
2,054,636	+				+0.4
2,054,636	+				-0.0
2,054,636	+				-0.5
2,054,636	+				+0.4
2,054,636	+				-0.9
2,054,637	-				+0.6
2,054,637	-				-1.7
2,054,681	+				-0.6
2,054,681	+				+0.4
2,054,681	+				+0.8
2,054,681	+				+0.5
2,054,681	+				-0.8
2,054,681	+				-0.7
2,054,681	+				+0.1
2,054,682	-				-0.7
2,054,682	-				+0.7
2,054,682	-				+0.1
2,054,682	-				+0.5
2,054,682	-				-1.7
2,054,682	-				-1.4
2,054,814	+				-0.1
2,054,814	+				-0.1
2,054,814	+				-0.7
2,054,814	+				-0.9
2,054,814	+				+0.9
2,054,814	+				-0.3
2,054,814	+				-0.6
2,054,814	+				-0.5
2,054,814	+				+4.2
2,054,814	+				-0.9
2,054,814	+				+1.2
2,054,815	-				-1.1
2,054,815	-				+1.1