Strain Fitness in Pseudomonas putida KT2440 around PP_1826

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
2,050,316	+		PP_1824	0.66	-0.6
2,050,316	+		PP_1824	0.66	+1.3
2,050,461	-				+0.4
2,050,521	-				-2.0
2,050,593	+				+0.8
2,050,717	+		PP_1825	0.11	+0.1
2,050,718	-		PP_1825	0.11	+0.4
2,050,851	+		PP_1825	0.53	+0.8
2,050,852	-		PP_1825	0.53	-1.1
2,050,893	-		PP_1825	0.66	+0.5
2,050,948	+		PP_1825	0.83	-0.4
2,050,993	+				-0.6
2,050,994	-				-0.2
2,050,994	-				+0.6
2,050,994	-				-0.3
2,050,994	-				-0.6
2,051,243	-		PP_1826	0.26	-0.4
2,051,501	+		PP_1826	0.70	-1.2
2,051,579	-		PP_1826	0.83	+0.1
2,051,579	-		PP_1826	0.83	+0.7
2,051,579	-		PP_1826	0.83	-1.0
2,051,635	+				-0.3
2,051,705	+				+1.5
2,051,705	+				-1.4
2,051,706	-				+0.3
2,051,706	-				+1.6
2,051,706	-				+0.6
2,051,707	+				-1.7
2,051,707	+				+0.7
2,051,707	+				-0.8
2,051,707	+				+0.4
2,051,707	+				+1.7
2,051,711	+				+2.7
2,051,711	+				-1.1
2,051,711	+				+0.7
2,051,712	-				+0.3
2,051,712	-				-0.4
2,051,712	-				+0.6
2,051,712	-				+0.9
2,051,712	-				+0.4
2,051,712	-				+0.5
2,051,825	+				-0.5
2,051,855	-				-1.1
2,051,855	-				+0.4
2,051,855	-				+0.6
2,051,893	+				+0.2
2,051,894	-				+1.0
2,052,025	+		PP_1827	0.18	-0.6
2,052,025	+		PP_1827	0.18	-0.6
2,052,026	-		PP_1827	0.18	-0.5
2,052,059	+		PP_1827	0.22	-1.6
2,052,102	-		PP_1827	0.27	+0.3
2,052,394	+		PP_1827	0.59	+0.2
2,052,394	+		PP_1827	0.59	-0.3
2,052,394	+		PP_1827	0.59	-0.1
2,052,395	-		PP_1827	0.59	-0.8
2,052,395	-		PP_1827	0.59	-0.0
2,052,466	+		PP_1827	0.67	+0.8
2,052,467	-		PP_1827	0.67	-0.2
2,052,560	+		PP_1827	0.77	+2.7
2,052,655	+		PP_1827	0.87	+0.8