Strain Fitness in Pseudomonas putida KT2440 around PP_1426

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,624,365	-				+2.7
1,624,383	+				-1.4
1,624,383	+				+0.1
1,624,384	-				+0.7
1,624,384	-				-0.6
1,624,384	-				+0.5
1,624,384	-				+1.0
1,624,403	-				+3.1
1,624,403	-				-0.1
1,624,403	-				-0.7
1,624,406	+				+2.0
1,624,406	+				+0.3
1,624,406	+				+0.3
1,624,406	+				+1.7
1,624,407	-				-0.7
1,624,407	-				+2.1
1,624,407	-				+0.1
1,624,407	-				-0.3
1,624,451	+				+0.7
1,624,451	+				+1.7
1,624,451	+				-0.7
1,624,451	+				-0.6
1,624,451	+				+0.3
1,624,452	-				+0.1
1,624,452	-				+0.9
1,624,453	+				-0.3
1,624,453	+				-0.7
1,624,783	-		PP_1425	0.14	-1.6
1,624,901	+		PP_1425	0.40	-1.5
1,624,901	+		PP_1425	0.40	-0.0
1,624,901	+		PP_1425	0.40	-0.1
1,624,902	-		PP_1425	0.40	+0.6
1,625,081	+		PP_1425	0.79	+0.2
1,625,081	+		PP_1425	0.79	+0.2
1,625,081	+		PP_1425	0.79	-0.3
1,625,081	+		PP_1425	0.79	+0.8
1,625,082	-		PP_1425	0.79	-1.1
1,625,082	-		PP_1425	0.79	-0.3
1,625,083	+		PP_1425	0.79	+1.3
1,625,083	+		PP_1425	0.79	-0.1
1,625,084	-		PP_1425	0.80	+1.7
1,625,084	-		PP_1425	0.80	+0.9
1,625,099	-		PP_1425	0.83	+0.4
1,625,175	+				+0.7
1,625,245	+				+1.3
1,625,284	-				-2.6
1,625,295	+				-1.4
1,625,296	-				-0.9
1,625,296	-				-0.7
1,625,397	+		PP_1426	0.10	-1.1
1,625,397	+		PP_1426	0.10	-3.0
1,625,397	+		PP_1426	0.10	-3.0
1,625,398	-		PP_1426	0.10	+0.4
1,625,398	-		PP_1426	0.10	-1.0
1,625,398	-		PP_1426	0.10	-0.3
1,625,406	+		PP_1426	0.11	-0.9
1,625,407	-		PP_1426	0.11	-2.0
1,625,407	-		PP_1426	0.11	-0.7
1,625,491	-		PP_1426	0.16	-0.9
1,625,491	-		PP_1426	0.16	+0.2
1,625,646	+		PP_1426	0.26	-1.8
1,625,647	-		PP_1426	0.26	-2.5
1,625,647	-		PP_1426	0.26	-0.3
1,625,727	+		PP_1426	0.31	-1.3
1,625,727	+		PP_1426	0.31	-1.2
1,625,727	+		PP_1426	0.31	-0.1
1,625,727	+		PP_1426	0.31	+0.5
1,625,727	+		PP_1426	0.31	-1.6
1,625,727	+		PP_1426	0.31	-0.5
1,625,728	-		PP_1426	0.31	-2.3
1,625,728	-		PP_1426	0.31	-0.9
1,625,728	-		PP_1426	0.31	-0.4
1,625,728	-		PP_1426	0.31	-1.9
1,625,728	-		PP_1426	0.31	-0.2
1,625,784	+		PP_1426	0.34	-1.2
1,625,784	+		PP_1426	0.34	+0.4
1,625,784	+		PP_1426	0.34	+0.8
1,625,784	+		PP_1426	0.34	+1.1
1,625,784	+		PP_1426	0.34	-0.4
1,625,785	-		PP_1426	0.34	-0.6
1,625,853	+		PP_1426	0.39	-0.9
1,625,911	-		PP_1426	0.42	-1.7
1,625,912	+		PP_1426	0.42	-1.0
1,625,912	+		PP_1426	0.42	-1.4
1,625,912	+		PP_1426	0.42	-0.5
1,625,912	+		PP_1426	0.42	-1.0
1,625,913	-		PP_1426	0.42	-1.5
1,625,913	-		PP_1426	0.42	-0.8
1,626,093	+		PP_1426	0.54	-1.7
1,626,202	-		PP_1426	0.60	-0.4
1,626,207	+		PP_1426	0.61	-1.3
1,626,208	-		PP_1426	0.61	+1.5
1,626,208	-		PP_1426	0.61	-1.2
1,626,208	-		PP_1426	0.61	-1.1
1,626,291	+		PP_1426	0.66	-2.2
1,626,292	-		PP_1426	0.66	-1.1
1,626,516	+		PP_1426	0.80	+0.3
1,626,516	+		PP_1426	0.80	-2.1
1,626,662	-		PP_1426	0.89	-0.7
1,626,662	-		PP_1426	0.89	-0.9
1,626,740	+				-1.4
1,626,769	+				-0.4
1,626,769	+				-1.7
1,626,769	+				-1.3
1,626,769	+				-1.0
1,626,770	-				-0.2
1,626,770	-				-1.2
1,626,770	-				-1.4
1,626,770	-				-1.3
1,626,849	+				-0.4
1,626,849	+				+1.4
1,626,850	-				-0.6
1,626,850	-				-0.2
1,626,850	-				-0.2
1,626,853	-				+0.7
1,626,906	+				-0.5
1,626,907	-				-0.9
1,626,932	+				-0.6
1,626,932	+				-0.6
1,626,932	+				-0.4
1,626,934	+				-1.1
1,626,934	+				-0.3
1,626,934	+				+1.7
1,626,934	+				+2.4
1,626,934	+				-2.0
1,626,934	+				-2.1
1,626,935	-				-0.1
1,626,935	-				-0.7
1,626,935	-				-0.0
1,626,963	+				-2.1
1,627,018	+				+0.0
1,627,033	+				+0.4
1,627,083	-				-0.6
1,627,093	-				+0.1
1,627,093	-				-0.8
1,627,116	-				+0.1
1,627,211	+				-0.6
1,627,211	+				+0.6
1,627,211	+				-0.6
1,627,211	+				-0.1
1,627,211	+				-0.6
1,627,211	+				-1.2
1,627,212	-				+0.5
1,627,277	+				-1.5
1,627,357	+		PP_1427	0.14	-1.0
1,627,357	+		PP_1427	0.14	+1.4
1,627,421	+		PP_1427	0.25	-0.4
1,627,421	+		PP_1427	0.25	-1.5
1,627,421	+		PP_1427	0.25	+0.1
1,627,421	+		PP_1427	0.25	-0.6
1,627,422	-		PP_1427	0.26	+0.8
1,627,422	-		PP_1427	0.26	+0.0
1,627,448	-		PP_1427	0.30	-0.7
1,627,487	-		PP_1427	0.37	-0.7
1,627,488	+		PP_1427	0.37	-1.0
1,627,488	+		PP_1427	0.37	-0.5
1,627,489	-		PP_1427	0.37	-0.5
1,627,489	-		PP_1427	0.37	-0.2
1,627,528	+		PP_1427	0.44	-1.2
1,627,528	+		PP_1427	0.44	+0.1
1,627,718	+		PP_1427	0.76	+0.6
1,627,719	-		PP_1427	0.77	-1.0
1,627,817	+				-1.5
1,627,817	+				-0.6
1,627,818	-				+1.1
1,627,821	+				-0.4
1,627,821	+				-0.5
1,627,821	+				+0.7
1,627,821	+				-0.3
1,627,822	-				-0.0
1,627,822	-				+0.7
1,627,822	-				-0.1
1,627,822	-				-0.9
1,627,822	-				+1.1
1,627,822	-				+0.1