Strain Fitness in Pseudomonas putida KT2440 around PP_1256

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1255 and PP_1256 are separated by 2 nucleotidesPP_1256 and PP_1257 are separated by 152 nucleotides PP_1255: PP_1255 - putative cis-4-hydroxy-D-proline oxidase, at 1,433,136 to 1,434,383 _1255 PP_1256: PP_1256 - putative alpha-ketoglutarate semialdehyde dehydrogenase, at 1,434,386 to 1,435,963 _1256 PP_1257: PP_1257 - putative 1-pyrroline-4-hydroxy-2-carboxylate deaminase, at 1,436,116 to 1,437,063 _1257 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -1 0 1 2 3at 1433.691 kb on + strand, within PP_1255at 1433.691 kb on + strand, within PP_1255at 1433.817 kb on + strand, within PP_1255at 1434.214 kb on - strand, within PP_1255at 1434.481 kb on - strandat 1434.481 kb on - strandat 1434.619 kb on + strand, within PP_1256at 1434.620 kb on - strand, within PP_1256at 1435.265 kb on - strand, within PP_1256at 1435.265 kb on - strand, within PP_1256at 1435.634 kb on + strand, within PP_1256at 1435.634 kb on + strand, within PP_1256at 1435.649 kb on - strand, within PP_1256at 1435.649 kb on - strand, within PP_1256at 1435.649 kb on - strand, within PP_1256at 1435.791 kb on + strand, within PP_1256at 1435.792 kb on - strand, within PP_1256at 1435.857 kb on + strandat 1435.965 kb on + strandat 1435.965 kb on + strandat 1435.982 kb on + strandat 1435.982 kb on + strandat 1435.983 kb on - strandat 1436.006 kb on - strandat 1436.006 kb on - strandat 1436.006 kb on - strandat 1436.150 kb on + strandat 1436.150 kb on + strandat 1436.151 kb on - strandat 1436.172 kb on - strandat 1436.172 kb on - strandat 1436.186 kb on + strandat 1436.186 kb on + strandat 1436.187 kb on - strandat 1436.187 kb on - strandat 1436.237 kb on + strand, within PP_1257at 1436.273 kb on + strand, within PP_1257at 1436.274 kb on - strand, within PP_1257at 1436.274 kb on - strand, within PP_1257at 1436.274 kb on - strand, within PP_1257at 1436.276 kb on + strand, within PP_1257at 1436.277 kb on - strand, within PP_1257at 1436.277 kb on - strand, within PP_1257at 1436.277 kb on - strand, within PP_1257at 1436.617 kb on + strand, within PP_1257at 1436.645 kb on + strand, within PP_1257at 1436.645 kb on + strand, within PP_1257at 1436.645 kb on + strand, within PP_1257at 1436.645 kb on + strand, within PP_1257at 1436.657 kb on + strand, within PP_1257at 1436.657 kb on + strand, within PP_1257at 1436.657 kb on + strand, within PP_1257at 1436.657 kb on + strand, within PP_1257at 1436.657 kb on + strand, within PP_1257at 1436.657 kb on + strand, within PP_1257at 1436.658 kb on - strand, within PP_1257at 1436.930 kb on + strand, within PP_1257at 1436.931 kb on - strand, within PP_1257at 1436.931 kb on - strand, within PP_1257

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Per-strain Table

Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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1,433,691 + PP_1255 0.44 -0.8
1,433,691 + PP_1255 0.44 -0.9
1,433,817 + PP_1255 0.55 +1.2
1,434,214 - PP_1255 0.86 +0.1
1,434,481 - -0.2
1,434,481 - +0.0
1,434,619 + PP_1256 0.15 -1.4
1,434,620 - PP_1256 0.15 -0.3
1,435,265 - PP_1256 0.56 -0.9
1,435,265 - PP_1256 0.56 -0.4
1,435,634 + PP_1256 0.79 -0.1
1,435,634 + PP_1256 0.79 -0.8
1,435,649 - PP_1256 0.80 +0.4
1,435,649 - PP_1256 0.80 -1.1
1,435,649 - PP_1256 0.80 -0.2
1,435,791 + PP_1256 0.89 -0.6
1,435,792 - PP_1256 0.89 -0.2
1,435,857 + +0.4
1,435,965 + -0.1
1,435,965 + -0.2
1,435,982 + -1.2
1,435,982 + -0.5
1,435,983 - +0.9
1,436,006 - -0.6
1,436,006 - +0.9
1,436,006 - -0.0
1,436,150 + -1.5
1,436,150 + -0.3
1,436,151 - +0.3
1,436,172 - -1.0
1,436,172 - -1.5
1,436,186 + +1.7
1,436,186 + -0.3
1,436,187 - -0.5
1,436,187 - -0.0
1,436,237 + PP_1257 0.13 -1.3
1,436,273 + PP_1257 0.17 -0.3
1,436,274 - PP_1257 0.17 -0.5
1,436,274 - PP_1257 0.17 +0.4
1,436,274 - PP_1257 0.17 -1.5
1,436,276 + PP_1257 0.17 +1.2
1,436,277 - PP_1257 0.17 -0.1
1,436,277 - PP_1257 0.17 +0.5
1,436,277 - PP_1257 0.17 +1.1
1,436,617 + PP_1257 0.53 +0.7
1,436,645 + PP_1257 0.56 -0.9
1,436,645 + PP_1257 0.56 +0.7
1,436,645 + PP_1257 0.56 -0.8
1,436,645 + PP_1257 0.56 -0.8
1,436,657 + PP_1257 0.57 +0.0
1,436,657 + PP_1257 0.57 +0.1
1,436,657 + PP_1257 0.57 +0.3
1,436,657 + PP_1257 0.57 -1.4
1,436,657 + PP_1257 0.57 -0.5
1,436,657 + PP_1257 0.57 +3.7
1,436,658 - PP_1257 0.57 -0.4
1,436,930 + PP_1257 0.86 +0.7
1,436,931 - PP_1257 0.86 +1.1
1,436,931 - PP_1257 0.86 -1.5

Or see this region's nucleotide sequence