Strain Fitness in Pseudomonas putida KT2440 around PP_1109

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,267,093	-		PP_1108	0.63	-0.8
1,267,103	-		PP_1108	0.64	-0.3
1,267,103	-		PP_1108	0.64	-0.3
1,267,479	+		PP_1108	0.79	-0.2
1,267,499	-		PP_1108	0.80	-1.9
1,267,499	-		PP_1108	0.80	-0.7
1,267,530	+		PP_1108	0.81	-0.8
1,267,542	+		PP_1108	0.82	-1.9
1,267,605	+		PP_1108	0.84	-0.6
1,267,605	+		PP_1108	0.84	-0.6
1,267,752	+				-0.5
1,268,029	+				-0.6
1,268,030	-				-0.9
1,268,034	+				-1.3
1,268,034	+				-0.1
1,268,034	+				+0.7
1,268,035	-				+0.1
1,268,035	-				+0.8
1,268,035	-				-1.8
1,268,035	-				+1.1
1,268,037	+				+0.6
1,268,037	+				-0.4
1,268,038	-				-0.9
1,268,038	-				-1.1
1,268,038	-				+0.0
1,268,149	+				-3.8
1,268,149	+				-4.6
1,268,150	-				-4.7
1,268,158	+				-2.8
1,268,159	-				+2.7
1,268,159	-				-2.9
1,268,219	+				-2.5
1,268,258	-		PP_1109	0.12	-2.8
1,268,258	-		PP_1109	0.12	-2.1
1,268,258	-		PP_1109	0.12	-2.1
1,268,259	+		PP_1109	0.13	-2.3
1,268,259	+		PP_1109	0.13	-1.4
1,268,260	-		PP_1109	0.13	-3.4
1,268,260	-		PP_1109	0.13	+0.4
1,268,273	+		PP_1109	0.14	-3.7
1,268,273	+		PP_1109	0.14	-3.5
1,268,273	+		PP_1109	0.14	-3.2
1,268,273	+		PP_1109	0.14	-2.2
1,268,274	-		PP_1109	0.14	-3.5
1,268,274	-		PP_1109	0.14	-3.5
1,268,274	-		PP_1109	0.14	-3.2
1,268,383	+		PP_1109	0.22	-3.5
1,268,383	+		PP_1109	0.22	-2.9
1,268,383	+		PP_1109	0.22	-3.5
1,268,384	-		PP_1109	0.22	-3.1
1,268,400	+		PP_1109	0.23	-3.8
1,268,400	+		PP_1109	0.23	-3.9
1,268,400	+		PP_1109	0.23	-2.8
1,268,401	-		PP_1109	0.23	-3.5
1,268,401	-		PP_1109	0.23	-2.7
1,268,401	-		PP_1109	0.23	-3.6
1,268,401	-		PP_1109	0.23	-3.6
1,268,401	-		PP_1109	0.23	-3.5
1,268,401	-		PP_1109	0.23	-4.0
1,268,401	-		PP_1109	0.23	-4.1
1,268,456	+		PP_1109	0.27	-2.1
1,268,457	-		PP_1109	0.27	-3.1
1,268,548	+		PP_1109	0.34	-3.5
1,268,548	+		PP_1109	0.34	-3.3
1,268,548	+		PP_1109	0.34	-4.1
1,268,548	+		PP_1109	0.34	-3.9
1,268,548	+		PP_1109	0.34	+0.1
1,268,549	-		PP_1109	0.34	-3.6
1,268,549	-		PP_1109	0.34	-4.6
1,268,549	-		PP_1109	0.34	-3.7
1,268,552	+		PP_1109	0.34	-3.7
1,268,552	+		PP_1109	0.34	-4.0
1,268,615	-		PP_1109	0.39	-2.9
1,269,019	+		PP_1109	0.69	-2.1
1,269,020	-		PP_1109	0.69	-2.7
1,269,244	+		PP_1109	0.86	-1.4
1,269,245	-		PP_1109	0.86	-2.7
1,269,759	-		PP_1110	0.21	-3.5
1,269,862	+				-0.1
1,269,902	-		PP_1110	0.41	-0.3
1,269,910	-		PP_1110	0.42	-4.3
1,270,084	+		PP_1110	0.67	-0.7
1,270,085	-		PP_1110	0.67	-1.5
1,270,249	-				-3.8
1,270,329	+				+0.7
1,270,363	-				+0.1