Strain Fitness in Pseudomonas putida KT2440 around PP_0806

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
925,707	+		PP_0805	0.36	+2.7
925,712	+		PP_0805	0.36	+3.7
925,713	-		PP_0805	0.36	+1.0
925,910	+		PP_0805	0.50	+2.8
925,923	-		PP_0805	0.51	+0.2
925,969	+		PP_0805	0.54	+2.6
925,970	-		PP_0805	0.54	+1.7
926,102	+		PP_0805	0.64	+2.4
926,102	+		PP_0805	0.64	+1.8
926,103	-		PP_0805	0.64	+2.7
926,103	-		PP_0805	0.64	+2.4
926,211	-		PP_0805	0.71	+2.4
926,309	+		PP_0805	0.78	+1.7
926,313	-				+1.7
926,351	+		PP_0805	0.81	+2.3
926,352	-		PP_0805	0.81	+1.2
926,352	-		PP_0805	0.81	+1.6
926,352	-		PP_0805	0.81	+2.3
926,530	+				+1.3
926,530	+				+1.1
926,530	+				+2.4
926,530	+				+1.2
926,530	+				+1.1
926,531	-				+1.4
926,531	-				+1.3
926,531	-				+0.9
926,531	-				+2.7
926,531	-				+2.7
926,531	-				+0.7
926,531	-				+1.5
926,531	-				+2.1
926,531	-				+1.8
926,531	-				+1.7
926,532	+				+2.5
926,532	+				+2.0
926,533	-				+0.6
926,533	-				+1.6
926,533	-				+1.4
926,533	-				-0.3
926,627	+				+1.6
926,627	+				+0.8
926,627	+				+2.1
926,636	+				+1.2
926,637	-				-0.9
926,663	-				+0.3
926,679	+				+1.7
926,680	-				+0.5
926,750	+				+4.0
926,750	+				+2.7
926,750	+				-0.4
926,751	-				+0.9
926,757	+				+1.5
926,759	+				+2.0
926,760	-				+3.7
927,289	+				+3.7
927,289	+				+1.2
927,289	+				+2.7
927,289	+				+0.7
927,290	-				+1.7
927,290	-				+1.7
927,290	-				+1.6
927,296	+				+0.9
927,353	+				+2.6
927,353	+				+1.1
927,353	+				+1.2
927,353	+				+0.0
927,353	+				+1.7
927,353	+				+3.3
927,353	+				+1.1
927,354	-				+3.0
927,354	-				+0.9
927,359	+				+2.0
927,359	+				+0.3
927,360	-				+1.0
927,360	-				+1.7
927,360	-				+1.3
927,360	-				+1.8
927,360	-				+1.3
927,392	+				+0.9
927,393	-				+2.3
927,419	+				+1.5
927,434	+				+1.8
927,434	+				+0.8
927,434	+				+1.2
927,435	-				+1.5
927,435	-				+2.7
927,435	-				+2.0
927,548	+				+1.4
927,548	+				+1.3
927,548	+				+5.0
927,549	-				+3.0
927,549	-				+2.0
927,549	-				+1.4
927,616	+				+2.7
927,616	+				+1.3
927,616	+				+0.7
927,617	-				+0.8
927,617	-				+1.5
927,617	-				+1.7
927,617	-				+0.8
927,623	+				+2.0
927,623	+				+1.3
927,624	-				+1.1
927,624	-				+1.7
927,651	+				+1.3
927,652	-				+1.3
927,652	-				+1.7
927,653	+				+1.5
927,673	+				+0.1
927,674	-				+2.1
927,707	-				+2.3
927,819	+				+1.7
927,819	+				+1.2
927,819	+				+2.1
927,842	+				+1.4
927,842	+				+2.1
927,842	+				+1.7
927,843	-				+2.0
927,843	-				+1.3
927,843	-				+2.6
927,891	+				+1.7
927,891	+				+1.3
927,891	+				+1.8
927,891	+				+1.8
927,937	-				+1.0
927,980	+				+1.3
927,980	+				+1.9
927,980	+				+2.7
927,981	-				+1.8
928,031	+				+0.9
928,032	-				+1.3
928,076	+				+2.2
928,127	+				+1.6
928,128	-				+1.1
928,133	+				+2.1
928,134	-				+0.6
928,134	-				+2.3
928,134	-				+0.1
928,205	+				+2.1
928,287	+				+0.9
928,596	+		PP_0806	0.10	+1.9
928,596	+		PP_0806	0.10	+1.3
928,597	-		PP_0806	0.10	+1.6
928,634	+		PP_0806	0.10	+2.9
928,634	+		PP_0806	0.10	+2.5
928,635	-		PP_0806	0.10	+1.5
928,635	-		PP_0806	0.10	+1.5
928,657	+		PP_0806	0.10	+1.3
928,657	+		PP_0806	0.10	+1.5
928,680	-		PP_0806	0.11	+1.7
928,680	-		PP_0806	0.11	+0.3
928,928	-		PP_0806	0.12	+1.7
929,162	-		PP_0806	0.13	+1.1
929,162	-		PP_0806	0.13	+1.3
929,371	-		PP_0806	0.14	+1.0
929,395	+		PP_0806	0.14	+1.5
929,437	-		PP_0806	0.15	+2.0
929,442	+		PP_0806	0.15	+1.7
929,537	+		PP_0806	0.15	+1.1
929,537	+		PP_0806	0.15	+2.0
929,537	+		PP_0806	0.15	+1.7
929,590	+		PP_0806	0.15	+1.3
929,591	-		PP_0806	0.15	+1.0
929,686	+		PP_0806	0.16	+1.7
929,686	+		PP_0806	0.16	+0.6
929,686	+		PP_0806	0.16	+0.7
929,687	-		PP_0806	0.16	+2.4
929,819	-		PP_0806	0.17	+1.1
930,047	+		PP_0806	0.18	+1.5
930,048	-		PP_0806	0.18	+1.7
930,066	+		PP_0806	0.18	+1.9
930,066	+		PP_0806	0.18	+0.4
930,066	+		PP_0806	0.18	+2.7
930,066	+		PP_0806	0.18	+1.3
930,067	-		PP_0806	0.18	+1.5
930,067	-		PP_0806	0.18	+2.1
930,067	-		PP_0806	0.18	+0.9
930,067	-		PP_0806	0.18	+1.7
930,067	-		PP_0806	0.18	+1.6
930,130	+		PP_0806	0.18	+1.2
930,131	-		PP_0806	0.18	+1.9
930,131	-		PP_0806	0.18	+1.7
930,947	+		PP_0806	0.22	+0.1
930,948	-		PP_0806	0.22	+1.2
931,100	-		PP_0806	0.23	+1.4
931,166	-		PP_0806	0.24	+0.4
931,183	+		PP_0806	0.24	+1.7
931,184	-		PP_0806	0.24	+1.3
931,201	-		PP_0806	0.24	+1.1
931,314	+		PP_0806	0.24	+1.6
931,552	-		PP_0806	0.26	+0.8
931,566	+		PP_0806	0.26	+1.2
932,074	+		PP_0806	0.28	+2.1
932,075	-		PP_0806	0.28	+1.9
932,093	-		PP_0806	0.29	+0.3
932,206	+		PP_0806	0.29	+1.7
932,207	-		PP_0806	0.29	+1.8
932,223	-		PP_0806	0.29	+1.6
932,284	+		PP_0806	0.30	+2.7
932,445	+		PP_0806	0.30	+2.1
932,445	+		PP_0806	0.30	+3.1
932,446	-		PP_0806	0.30	+0.7
932,585	+		PP_0806	0.31	+1.1
932,586	-		PP_0806	0.31	+1.7
932,586	-		PP_0806	0.31	+1.7
932,586	-		PP_0806	0.31	+0.6
932,638	+		PP_0806	0.31	+1.6
932,763	+		PP_0806	0.32	+2.2
932,932	-		PP_0806	0.33	+2.3
933,114	+		PP_0806	0.34	+2.2
933,114	+		PP_0806	0.34	+2.0
933,114	+		PP_0806	0.34	+1.1
933,115	-		PP_0806	0.34	+1.6
933,115	-		PP_0806	0.34	+1.8
933,115	-		PP_0806	0.34	+2.2
933,115	-		PP_0806	0.34	+2.1
933,244	+		PP_0806	0.35	+2.1
933,244	+		PP_0806	0.35	+0.5
933,244	+		PP_0806	0.35	+2.7
933,245	-		PP_0806	0.35	+1.7
933,245	-		PP_0806	0.35	+1.1
933,312	+		PP_0806	0.35	+0.5
933,745	+		PP_0806	0.37	+2.6
933,745	+		PP_0806	0.37	+2.1
933,746	-		PP_0806	0.37	+1.9
933,746	-		PP_0806	0.37	+1.9
933,746	-		PP_0806	0.37	+2.7
933,795	+		PP_0806	0.38	+1.9
933,795	+		PP_0806	0.38	+2.7
933,798	+		PP_0806	0.38	+1.4
933,799	-		PP_0806	0.38	+2.3
933,799	-		PP_0806	0.38	+1.4
933,817	+		PP_0806	0.38	+1.0
933,817	+				+0.1
933,818	-		PP_0806	0.38	-0.2
933,818	-		PP_0806	0.38	+2.2
933,818	-		PP_0806	0.38	+2.1
933,895	-		PP_0806	0.38	+1.6
934,033	-		PP_0806	0.39	+1.8
934,121	-		PP_0806	0.39	+0.9
934,231	+		PP_0806	0.40	+1.1
934,411	+		PP_0806	0.41	+3.1
934,447	-		PP_0806	0.41	+1.9
934,748	-		PP_0806	0.43	+1.6
934,974	+		PP_0806	0.44	+1.6
935,002	+		PP_0806	0.44	+1.5
935,003	-		PP_0806	0.44	+1.3
935,003	-		PP_0806	0.44	+0.7
935,022	+		PP_0806	0.44	+2.3
935,023	-		PP_0806	0.44	+2.1
935,023	-		PP_0806	0.44	+1.6
935,023	-				+2.7
935,026	+		PP_0806	0.44	+1.6
935,026	+		PP_0806	0.44	+1.0
935,026	+		PP_0806	0.44	+4.0
935,026	+		PP_0806	0.44	+1.7
935,027	-		PP_0806	0.44	+1.3
935,027	-		PP_0806	0.44	+1.0
935,027	-		PP_0806	0.44	+2.1
935,027	-		PP_0806	0.44	+1.3
935,032	+		PP_0806	0.44	+1.1
935,032	+		PP_0806	0.44	+1.3
935,032	+		PP_0806	0.44	+1.1
935,033	-		PP_0806	0.44	+2.1
935,161	-		PP_0806	0.45	+2.4
935,260	+		PP_0806	0.45	+0.4
935,626	-		PP_0806	0.47	+1.9
935,845	-		PP_0806	0.48	+0.7
936,135	+		PP_0806	0.50	+0.9
936,156	+		PP_0806	0.50	+3.4
936,312	+		PP_0806	0.51	+2.3
936,424	-		PP_0806	0.51	+1.4
936,659	+		PP_0806	0.53	+1.5
936,659	+		PP_0806	0.53	+1.7
936,659	+		PP_0806	0.53	+2.3
936,659	+		PP_0806	0.53	+1.3
936,660	-		PP_0806	0.53	+1.8
936,660	-		PP_0806	0.53	+0.8
936,815	-		PP_0806	0.53	+2.7
936,815	-		PP_0806	0.53	+1.6
936,892	+		PP_0806	0.54	-0.2
936,893	-		PP_0806	0.54	+1.6
936,918	+		PP_0806	0.54	+1.1
936,919	-		PP_0806	0.54	+1.5
936,924	+		PP_0806	0.54	+1.7
936,924	+		PP_0806	0.54	+2.2
936,925	-		PP_0806	0.54	+1.7
936,925	-		PP_0806	0.54	+0.1
936,925	-		PP_0806	0.54	+0.8
937,171	+		PP_0806	0.55	+2.2
937,312	+		PP_0806	0.56	+1.2
937,519	+		PP_0806	0.57	+1.1
937,521	+		PP_0806	0.57	+2.3
937,521	+		PP_0806	0.57	+1.4
937,521	+		PP_0806	0.57	+0.3
937,522	-		PP_0806	0.57	+1.5
937,522	-		PP_0806	0.57	+1.1
937,522	-		PP_0806	0.57	+1.7
937,522	-		PP_0806	0.57	+2.3
937,522	-		PP_0806	0.57	+2.1
937,795	-		PP_0806	0.59	+2.0
937,858	-		PP_0806	0.59	+1.4
938,101	+		PP_0806	0.60	+2.6
938,332	+		PP_0806	0.61	+1.7
938,524	+		PP_0806	0.63	+1.1
938,524	+		PP_0806	0.63	+1.4
938,524	+		PP_0806	0.63	+1.6
938,524	+		PP_0806	0.63	+1.2
938,524	+		PP_0806	0.63	+1.6
938,525	-		PP_0806	0.63	+0.5
938,525	-		PP_0806	0.63	+2.0
938,525	-		PP_0806	0.63	+1.1
938,525	-		PP_0806	0.63	+1.4
938,525	-		PP_0806	0.63	+2.1
938,525	-		PP_0806	0.63	+2.0
938,527	+		PP_0806	0.63	+1.5
938,689	+		PP_0806	0.63	+2.3
938,689	+		PP_0806	0.63	+1.6
938,690	-		PP_0806	0.63	+2.1
938,842	+		PP_0806	0.64	+0.6
938,842	+		PP_0806	0.64	+1.7
938,843	-		PP_0806	0.64	+1.5
938,881	+		PP_0806	0.64	+1.3
938,881	+		PP_0806	0.64	+2.7
938,882	-		PP_0806	0.64	+2.0
938,910	+		PP_0806	0.65	+1.4
939,112	+		PP_0806	0.66	+1.7
939,136	+		PP_0806	0.66	+1.0
939,136	+		PP_0806	0.66	+1.6
939,137	-		PP_0806	0.66	+1.8
939,143	-		PP_0806	0.66	+2.0
939,277	+		PP_0806	0.66	+2.7
939,397	+		PP_0806	0.67	+2.3
939,550	-		PP_0806	0.68	+1.6
939,623	-		PP_0806	0.68	+0.9
939,623	-		PP_0806	0.68	+2.0
939,623	-		PP_0806	0.68	+1.5
939,623	-		PP_0806	0.68	+1.4
939,830	-		PP_0806	0.69	+1.5
939,830	-		PP_0806	0.69	+1.1
940,119	+		PP_0806	0.71	+1.0
940,120	-		PP_0806	0.71	+0.9
940,515	+		PP_0806	0.73	+1.8
940,576	+		PP_0806	0.73	+1.8
940,576	+		PP_0806	0.73	+2.7
940,577	-		PP_0806	0.73	+1.3
940,577	-		PP_0806	0.73	+0.9
940,681	+		PP_0806	0.74	+0.9
940,801	+		PP_0806	0.75	+1.8
940,834	+		PP_0806	0.75	+1.8
940,834	+		PP_0806	0.75	+0.7
940,835	-		PP_0806	0.75	+1.7
940,835	-		PP_0806	0.75	+1.7
940,835	-		PP_0806	0.75	+2.7
940,934	-		PP_0806	0.75	+1.5
941,059	-		PP_0806	0.76	+1.9
941,059	-		PP_0806	0.76	+1.2
941,120	-		PP_0806	0.76	+1.6
941,399	-		PP_0806	0.78	+0.8
941,462	-		PP_0806	0.78	+1.1
941,462	-		PP_0806	0.78	+1.3
941,951	-		PP_0806	0.81	+0.7
941,951	-		PP_0806	0.81	+1.4
942,847	+		PP_0806	0.85	+0.7
942,987	+		PP_0806	0.86	+1.7
942,988	-		PP_0806	0.86	+0.6
943,258	+		PP_0806	0.88	+1.7
943,258	+		PP_0806	0.88	+2.4
943,269	+		PP_0806	0.88	+0.7
943,511	-		PP_0806	0.89	+1.9
943,511	-		PP_0806	0.89	+1.8
944,352	+				+2.3
944,352	+				+1.5
944,352	+				+1.4
944,352	+				+1.0
944,352	+				+1.1
944,352	+				+1.7
944,353	-				+2.7
944,353	-				+1.9
944,355	+				+0.4
944,355	+				+2.1
944,356	-				+1.1
944,356	-				+1.5
944,356	-				+2.1
944,556	+				+1.4
944,557	-				+1.6
944,634	+				+1.6
944,635	-				+0.7
944,635	-				+2.4
944,682	+				+1.6
944,682	+				+2.0
944,683	-				+0.5
944,748	+				+1.3
944,749	-				+0.5
944,794	+				+1.2
944,794	+				+1.8
944,872	-				+0.7
945,279	+				+0.1
945,353	+				+2.5
945,354	-				+1.7
945,396	+				+1.7
945,396	+				+1.7
945,397	-				+2.2
945,550	+				+1.3
945,558	+				+2.1
945,558	+				+1.6
945,680	+				+0.4
945,680	+				+1.5
945,680	+				+1.0
945,703	+				+2.7
945,703	+				+2.1
945,703	+				+1.7
945,703	+				+1.3
945,703	+				+1.3
945,703	+				+1.9
945,703	+				+1.1
945,704	-				-0.9
945,704	-				+1.8
945,704	-				-0.2
945,750	+				+1.7
945,750	+				+0.9
945,750	+				+2.1
945,750	+				+1.4
945,750	+				+2.0
945,750	+				+1.2
945,750	+				+1.7
945,751	-				+1.1
945,751	-				+0.3
945,751	-				-0.1
945,751	-				+1.4
945,752	+				+2.0
945,752	+				+1.9
945,752	+				+1.3
945,752	+				+1.0
945,752	+				+1.6
945,752	+				+1.7
945,752	+				+1.2
945,752	+				+2.0
945,752	+				-0.7
945,752	+				-0.3
945,752	+				+1.2
945,752	+				+1.3
945,752	+				+1.6
945,753	-				+1.4
945,753	-				+1.6
945,753	-				+0.8
945,753	-				+1.5
945,753	-				+1.8
945,753	-				+1.3
945,753	-				+1.7
945,791	+				+0.9
945,803	-				+0.7
945,936	+				+0.4
945,936	+				-0.3
945,937	-				+0.4
945,937	-				+1.3
945,940	+				+0.6
945,940	+				-0.2
945,940	+				+0.5
945,941	-				+1.4
945,941	-				-0.4
946,069	+		PP_0807	0.17	-0.3
946,070	-		PP_0807	0.17	-0.3
946,070	-		PP_0807	0.17	-0.1
946,070	-		PP_0807	0.17	+0.6
946,239	+		PP_0807	0.27	-1.7
946,240	-		PP_0807	0.27	-0.8
946,240	-		PP_0807	0.27	+0.1
946,251	-		PP_0807	0.28	+0.5
946,318	-		PP_0807	0.32	-1.1
946,318	-		PP_0807	0.32	+0.3
946,452	-		PP_0807	0.41	+0.2
946,452	-		PP_0807	0.41	-0.3