Strain Fitness in Pseudomonas putida KT2440 around PP_0768

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
886,100	+		PP_0767	0.74	+3.7
886,100	+		PP_0767	0.74	+0.9
886,101	-		PP_0767	0.74	-2.5
886,200	-		PP_0767	0.78	-0.0
886,200	-		PP_0767	0.78	-0.8
886,200	-		PP_0767	0.78	+0.0
886,200	-		PP_0767	0.78	+0.7
886,200	-		PP_0767	0.78	-0.2
886,297	+		PP_0767	0.81	+0.5
886,333	-		PP_0767	0.83	+0.8
886,367	-		PP_0767	0.84	-0.6
886,367	-		PP_0767	0.84	-2.5
886,367	-		PP_0767	0.84	-2.1
886,367	-		PP_0767	0.84	-0.8
886,600	+				+0.4
886,809	-				+0.9
886,820	-				-0.4
886,820	-				+1.3
886,820	-				+0.7
886,820	-				+0.8
886,820	-				-0.7
886,834	+				+0.4
886,835	-				+1.7
886,835	-				-0.2
886,856	-				-0.1
886,856	-				+0.5
886,856	-				-0.8
886,858	+				+0.8
886,858	+				+1.7
886,859	-				-0.1
886,878	-				-1.6
886,878	-				-0.1
886,878	-				-0.5
886,878	-				+0.5
886,906	+				-3.1
886,907	-				-0.2
886,912	+				-0.8
886,977	-				+0.4
887,024	-				-0.6
887,024	-				-0.4
887,120	+				+0.4
887,120	+				+0.8
887,121	-				-0.8
887,294	+		PP_0768	0.20	+0.7
887,294	+		PP_0768	0.20	-0.1
887,412	+		PP_0768	0.28	-0.6
887,565	+		PP_0768	0.37	+1.1
887,566	-		PP_0768	0.37	+2.1
887,566	-		PP_0768	0.37	+0.0
887,567	+		PP_0768	0.37	-1.6
887,567	+		PP_0768	0.37	-0.1
887,568	-		PP_0768	0.37	-1.4
887,669	+		PP_0768	0.44	-0.5
887,867	+		PP_0768	0.56	-1.4
888,221	+		PP_0768	0.78	-1.6
888,333	-		PP_0768	0.85	-1.3
888,530	+				+0.2
888,779	-		PP_0769	0.30	+0.8
888,779	-		PP_0769	0.30	+0.6
888,806	+		PP_0769	0.34	+0.6
888,806	+		PP_0769	0.34	-1.6
888,817	+		PP_0769	0.35	-0.2
888,869	+		PP_0769	0.43	-0.6
888,869	+		PP_0769	0.43	-0.6
888,870	-		PP_0769	0.43	+1.1
888,870	-		PP_0769	0.43	-0.2
889,103	-		PP_0769	0.77	-1.6
889,103	-		PP_0769	0.77	-2.2
889,103	-		PP_0769	0.77	-0.6
889,151	-		PP_0769	0.84	-0.1
889,211	+				+0.0
889,211	+				+0.1
889,211	+				+0.5
889,257	-				-0.6
889,278	+				-0.3
889,278	+				+2.1
889,324	+				-0.7
889,324	+				-1.0
889,382	+				+0.3
889,383	-				+0.1
889,383	-				+0.6
889,383	-				-0.6
889,383	-				-0.1
889,387	-				-0.2
889,430	-				+0.8
889,430	-				-0.0
889,432	+				+1.3
889,432	+				+0.7
889,432	+				-1.3
889,432	+				-0.2
889,432	+				-0.6
889,432	+				+0.1
889,433	-				-0.4
889,433	-				+0.1
889,433	-				-0.0
889,433	-				-0.0
889,433	-				-0.3
889,433	-				+0.6
889,433	-				+0.8
889,433	-				+0.2
889,433	-				+0.5
889,436	+				+1.3
889,436	+				+0.4
889,436	+				+0.9
889,436	+				-0.8
889,436	+				-0.6
889,436	+				-1.4
889,436	+				-0.0
889,437	-				+0.4
889,437	-				-0.1
889,437	-				-0.3
889,437	-				+0.1
889,437	-				-0.6
889,437	-				-0.7
889,437	-				+0.9
889,437	-				+0.1
889,437	-				+0.7
889,437	-				-1.3
889,440	+				+0.3
889,441	-				-0.6
889,452	+				+0.4
889,453	-				-0.6
889,453	-				+0.5
889,453	-				+0.3
889,515	+		PP_0770	0.23	+1.2