Strain Fitness in Pseudomonas putida KT2440 around PP_0684

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0682 and PP_0683 are separated by 76 nucleotidesPP_0683 and PP_0684 are separated by 85 nucleotidesPP_0684 and PP_0685 are separated by 26 nucleotidesPP_0685 and PP_0686 are separated by 84 nucleotidesPP_0686 and PP_0687 are separated by 160 nucleotides PP_0682: PP_0682 - conserved inner membrane protein of unknown function, UPF0114 family, at 796,988 to 797,476 _0682 PP_0683: PP_0683 - conserved protein of unknown function, at 797,553 to 797,942 _0683 PP_0684: PP_0684 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 798,028 to 798,645 _0684 PP_0685: PP_0685 - conserved protein of unknown function, at 798,672 to 798,917 _0685 PP_0686: PP_0686 - conserved protein of unknown function, at 799,002 to 799,343 _0686 PP_0687: PP_0687 - octaprenyl diphosphate synthase, at 799,504 to 800,472 _0687 Position (kb) 798 799Strain fitness (log2 ratio) -2 -1 0 1 2at 797.045 kb on + strand, within PP_0682at 797.045 kb on + strand, within PP_0682at 797.046 kb on - strand, within PP_0682at 797.390 kb on + strand, within PP_0682at 797.402 kb on + strand, within PP_0682at 797.402 kb on + strand, within PP_0682at 797.402 kb on + strand, within PP_0682at 797.403 kb on - strand, within PP_0682at 797.403 kb on - strand, within PP_0682at 797.533 kb on + strandat 797.591 kb on - strandat 797.718 kb on + strand, within PP_0683at 797.719 kb on - strand, within PP_0683at 797.719 kb on - strand, within PP_0683at 797.719 kb on - strand, within PP_0683at 797.940 kb on + strandat 797.940 kb on + strandat 797.967 kb on - strandat 798.070 kb on + strandat 798.070 kb on + strandat 798.070 kb on + strandat 798.399 kb on + strand, within PP_0684at 798.400 kb on - strand, within PP_0684at 798.407 kb on - strandat 798.448 kb on + strandat 798.448 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.569 kb on - strand, within PP_0684at 798.643 kb on + strandat 798.644 kb on - strandat 798.644 kb on - strandat 798.713 kb on - strand, within PP_0685at 798.713 kb on - strand, within PP_0685at 798.874 kb on + strand, within PP_0685at 798.910 kb on + strandat 798.910 kb on + strandat 798.911 kb on - strandat 798.911 kb on - strandat 798.921 kb on + strandat 798.921 kb on + strandat 798.922 kb on - strandat 798.922 kb on - strandat 798.922 kb on - strandat 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.303 kb on + strand, within PP_0686at 799.303 kb on + strand, within PP_0686at 799.303 kb on + strand, within PP_0686at 799.304 kb on - strand, within PP_0686at 799.304 kb on - strand, within PP_0686at 799.304 kb on - strand, within PP_0686at 799.304 kb on - strand, within PP_0686at 799.374 kb on + strandat 799.374 kb on + strandat 799.389 kb on + strandat 799.390 kb on - strandat 799.390 kb on - strandat 799.396 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
remove
797,045 + PP_0682 0.12 +1.7
797,045 + PP_0682 0.12 +0.1
797,046 - PP_0682 0.12 +1.5
797,390 + PP_0682 0.82 +0.8
797,402 + PP_0682 0.85 +0.7
797,402 + PP_0682 0.85 -0.5
797,402 + PP_0682 0.85 +0.2
797,403 - PP_0682 0.85 +0.8
797,403 - PP_0682 0.85 -0.2
797,533 + -0.2
797,591 - -1.2
797,718 + PP_0683 0.42 -0.1
797,719 - PP_0683 0.43 +0.8
797,719 - PP_0683 0.43 -0.2
797,719 - PP_0683 0.43 +0.1
797,940 + -0.6
797,940 + +0.5
797,967 - +0.8
798,070 + +1.1
798,070 + +0.4
798,070 + -0.2
798,399 + PP_0684 0.60 -0.4
798,400 - PP_0684 0.60 -2.6
798,407 - +0.1
798,448 + +0.7
798,448 + PP_0684 0.68 -1.1
798,547 + PP_0684 0.84 -0.2
798,547 + PP_0684 0.84 -1.2
798,547 + PP_0684 0.84 -1.9
798,547 + PP_0684 0.84 -0.1
798,547 + PP_0684 0.84 -1.8
798,548 - PP_0684 0.84 -0.5
798,548 - PP_0684 0.84 -0.6
798,548 - PP_0684 0.84 -1.8
798,548 - PP_0684 0.84 -0.1
798,548 - PP_0684 0.84 +0.7
798,548 - PP_0684 0.84 -0.7
798,569 - PP_0684 0.88 -1.9
798,643 + -1.4
798,644 - -0.2
798,644 - +0.2
798,713 - PP_0685 0.17 +0.2
798,713 - PP_0685 0.17 +0.7
798,874 + PP_0685 0.82 +0.6
798,910 + -0.1
798,910 + -0.3
798,911 - -0.1
798,911 - +0.3
798,921 + +0.6
798,921 + -1.0
798,922 - -0.8
798,922 - +1.4
798,922 - -0.0
799,297 + PP_0686 0.86 +2.7
799,297 + PP_0686 0.86 -0.6
799,297 + PP_0686 0.86 -0.7
799,297 + PP_0686 0.86 +0.0
799,297 + PP_0686 0.86 +0.7
799,297 + PP_0686 0.86 +0.7
799,297 + PP_0686 0.86 +1.1
799,297 + PP_0686 0.86 -0.1
799,297 + PP_0686 0.86 +0.5
799,297 + PP_0686 0.86 -0.3
799,298 - PP_0686 0.87 -0.7
799,298 - PP_0686 0.87 -0.7
799,298 - PP_0686 0.87 +1.7
799,298 - PP_0686 0.87 +0.0
799,298 - PP_0686 0.87 -0.2
799,298 - PP_0686 0.87 -0.2
799,298 - PP_0686 0.87 -0.4
799,298 - PP_0686 0.87 -1.0
799,298 - PP_0686 0.87 +0.2
799,298 - PP_0686 0.87 +2.3
799,303 + PP_0686 0.88 +0.2
799,303 + PP_0686 0.88 -0.3
799,303 + PP_0686 0.88 +1.1
799,304 - PP_0686 0.88 -0.5
799,304 - PP_0686 0.88 -2.2
799,304 - PP_0686 0.88 +0.1
799,304 - PP_0686 0.88 +0.9
799,374 + -2.2
799,374 + +2.7
799,389 + +2.7
799,390 - +1.9
799,390 - +0.0
799,396 + -0.3

Or see this region's nucleotide sequence