Strain Fitness in Pseudomonas putida KT2440 around PP_0525

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0523 and PP_0524 overlap by 1 nucleotidesPP_0524 and PP_0525 overlap by 23 nucleotidesPP_0525 and PP_0526 are separated by 258 nucleotides PP_0523: PP_0523 - conserved membrane protein of unknown function, at 607,711 to 608,130 _0523 PP_0524: PP_0524 - putative Periplasmic cobalamin-binding protein HutB, at 608,130 to 608,942 _0524 PP_0525: PP_0525 - TonB-dependent receptor, B12 family, at 608,920 to 610,845 _0525 PP_0526: PP_0526 - transposase, at 611,104 to 612,069 _0526 Position (kb) 608 609 610 611Strain fitness (log2 ratio) -2 -1 0 1 2at 607.939 kb on - strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.090 kb on + strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.098 kb on + strandat 608.098 kb on + strandat 608.099 kb on - strandat 608.099 kb on - strandat 608.104 kb on + strandat 608.140 kb on + strandat 608.140 kb on + strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.173 kb on + strandat 608.174 kb on - strandat 608.174 kb on - strandat 608.191 kb on + strandat 608.191 kb on + strandat 608.191 kb on + strandat 608.192 kb on - strandat 608.529 kb on + strand, within PP_0524at 608.574 kb on + strand, within PP_0524at 608.604 kb on + strand, within PP_0524at 608.629 kb on - strand, within PP_0524at 608.629 kb on - strand, within PP_0524at 608.728 kb on + strand, within PP_0524at 608.728 kb on + strand, within PP_0524at 608.728 kb on + strand, within PP_0524at 608.728 kb on + strand, within PP_0524at 608.748 kb on - strand, within PP_0524at 608.748 kb on - strand, within PP_0524at 608.921 kb on + strandat 608.981 kb on + strandat 608.981 kb on + strandat 609.002 kb on + strandat 609.002 kb on + strandat 609.003 kb on - strandat 609.003 kb on - strandat 609.003 kb on - strandat 609.017 kb on + strandat 609.018 kb on - strandat 609.058 kb on - strandat 609.073 kb on + strandat 609.074 kb on - strandat 609.123 kb on + strand, within PP_0525at 609.123 kb on + strandat 609.124 kb on - strand, within PP_0525at 609.124 kb on - strand, within PP_0525at 609.140 kb on + strand, within PP_0525at 609.140 kb on + strand, within PP_0525at 609.141 kb on - strand, within PP_0525at 609.166 kb on - strand, within PP_0525at 609.199 kb on + strand, within PP_0525at 609.199 kb on + strand, within PP_0525at 609.235 kb on + strand, within PP_0525at 609.235 kb on + strand, within PP_0525at 609.236 kb on - strand, within PP_0525at 609.236 kb on - strand, within PP_0525at 609.404 kb on + strand, within PP_0525at 609.406 kb on + strand, within PP_0525at 609.407 kb on - strand, within PP_0525at 609.407 kb on - strand, within PP_0525at 609.500 kb on + strand, within PP_0525at 609.501 kb on - strand, within PP_0525at 609.512 kb on + strand, within PP_0525at 609.512 kb on + strand, within PP_0525at 609.513 kb on - strand, within PP_0525at 609.513 kb on - strand, within PP_0525at 609.551 kb on + strand, within PP_0525at 609.662 kb on + strand, within PP_0525at 609.662 kb on + strand, within PP_0525at 609.663 kb on - strand, within PP_0525at 609.663 kb on - strand, within PP_0525at 609.669 kb on - strand, within PP_0525at 609.669 kb on - strand, within PP_0525at 609.669 kb on - strand, within PP_0525at 609.802 kb on + strand, within PP_0525at 609.803 kb on - strand, within PP_0525at 609.834 kb on - strand, within PP_0525at 609.834 kb on - strand, within PP_0525at 609.838 kb on - strand, within PP_0525at 609.838 kb on - strand, within PP_0525at 609.948 kb on - strand, within PP_0525at 609.948 kb on - strand, within PP_0525at 609.981 kb on - strand, within PP_0525at 610.113 kb on - strand, within PP_0525at 610.346 kb on + strand, within PP_0525at 610.347 kb on - strand, within PP_0525at 610.347 kb on - strand, within PP_0525at 610.638 kb on + strand, within PP_0525at 610.722 kb on + strandat 610.722 kb on + strandat 610.723 kb on - strandat 610.743 kb on + strandat 610.882 kb on - strandat 610.904 kb on - strandat 610.904 kb on - strandat 610.904 kb on - strandat 610.904 kb on - strandat 610.904 kb on - strandat 610.904 kb on - strandat 610.904 kb on - strandat 610.904 kb on - strandat 610.909 kb on - strandat 610.909 kb on - strandat 610.909 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
remove
607,939 - PP_0523 0.54 +1.3
607,997 + PP_0523 0.68 +0.0
607,997 + PP_0523 0.68 -0.1
607,997 + PP_0523 0.68 +1.1
607,997 + PP_0523 0.68 +1.2
607,997 + PP_0523 0.68 -0.1
607,997 + PP_0523 0.68 +0.2
607,997 + PP_0523 0.68 +1.1
607,997 + PP_0523 0.68 +1.4
607,997 + PP_0523 0.68 -0.2
607,997 + PP_0523 0.68 -0.3
607,997 + PP_0523 0.68 +1.2
607,997 + PP_0523 0.68 +1.7
607,997 + PP_0523 0.68 -1.4
607,998 - PP_0523 0.68 +0.6
607,998 - PP_0523 0.68 -0.2
607,998 - PP_0523 0.68 +0.8
607,998 - PP_0523 0.68 +0.1
607,998 - PP_0523 0.68 +1.1
607,998 - PP_0523 0.68 -0.2
607,998 - PP_0523 0.68 -0.3
607,998 - PP_0523 0.68 -0.1
607,998 - PP_0523 0.68 +1.7
607,998 - PP_0523 0.68 -1.2
607,998 - PP_0523 0.68 -1.3
607,998 - PP_0523 0.68 -1.0
607,998 - PP_0523 0.68 -2.0
607,999 + PP_0523 0.69 +1.7
607,999 + PP_0523 0.69 -0.6
607,999 + PP_0523 0.69 +1.1
607,999 + PP_0523 0.69 +0.6
607,999 + PP_0523 0.69 +0.5
607,999 + PP_0523 0.69 -2.4
607,999 + PP_0523 0.69 -0.0
607,999 + PP_0523 0.69 -0.5
607,999 + PP_0523 0.69 +0.7
607,999 + PP_0523 0.69 +0.4
608,000 - PP_0523 0.69 -1.3
608,000 - PP_0523 0.69 +1.1
608,000 - PP_0523 0.69 -0.2
608,000 - PP_0523 0.69 -1.4
608,090 + +2.1
608,091 - +0.2
608,091 - +0.8
608,091 - +2.7
608,091 - -0.1
608,091 - -0.5
608,098 + -0.4
608,098 + +2.7
608,099 - -0.8
608,099 - +1.7
608,104 + -0.0
608,140 + -0.4
608,140 + -0.4
608,141 - +0.2
608,141 - +0.6
608,141 - +0.7
608,141 - -0.2
608,173 + +0.7
608,174 - +0.6
608,174 - -1.5
608,191 + -1.1
608,191 + -1.1
608,191 + +1.3
608,192 - -0.9
608,529 + PP_0524 0.49 +0.6
608,574 + PP_0524 0.55 -0.5
608,604 + PP_0524 0.58 +0.4
608,629 - PP_0524 0.61 -1.1
608,629 - PP_0524 0.61 +0.3
608,728 + PP_0524 0.74 -0.4
608,728 + PP_0524 0.74 +0.2
608,728 + PP_0524 0.74 -0.3
608,728 + PP_0524 0.74 -0.5
608,748 - PP_0524 0.76 +1.1
608,748 - PP_0524 0.76 -0.0
608,921 + -1.1
608,981 + +1.0
608,981 + -1.3
609,002 + -0.1
609,002 + +0.4
609,003 - -0.5
609,003 - -0.6
609,003 - +0.6
609,017 + +0.1
609,018 - +0.6
609,058 - +0.5
609,073 + -0.0
609,074 - -0.4
609,123 + PP_0525 0.11 +0.2
609,123 + +0.9
609,124 - PP_0525 0.11 +0.6
609,124 - PP_0525 0.11 +0.3
609,140 + PP_0525 0.11 +1.0
609,140 + PP_0525 0.11 +0.8
609,141 - PP_0525 0.11 -0.5
609,166 - PP_0525 0.13 +0.2
609,199 + PP_0525 0.14 +0.5
609,199 + PP_0525 0.14 +1.3
609,235 + PP_0525 0.16 +0.1
609,235 + PP_0525 0.16 +0.3
609,236 - PP_0525 0.16 -0.4
609,236 - PP_0525 0.16 -0.4
609,404 + PP_0525 0.25 -1.1
609,406 + PP_0525 0.25 +0.3
609,407 - PP_0525 0.25 -0.7
609,407 - PP_0525 0.25 -2.0
609,500 + PP_0525 0.30 +0.4
609,501 - PP_0525 0.30 +1.0
609,512 + PP_0525 0.31 -0.5
609,512 + PP_0525 0.31 -0.6
609,513 - PP_0525 0.31 -0.7
609,513 - PP_0525 0.31 +0.1
609,551 + PP_0525 0.33 +0.5
609,662 + PP_0525 0.39 -0.5
609,662 + PP_0525 0.39 +1.1
609,663 - PP_0525 0.39 +1.6
609,663 - PP_0525 0.39 +0.0
609,669 - PP_0525 0.39 +0.1
609,669 - PP_0525 0.39 +2.7
609,669 - PP_0525 0.39 -1.4
609,802 + PP_0525 0.46 +1.0
609,803 - PP_0525 0.46 +1.3
609,834 - PP_0525 0.47 -0.5
609,834 - PP_0525 0.47 +0.6
609,838 - PP_0525 0.48 +0.4
609,838 - PP_0525 0.48 -0.5
609,948 - PP_0525 0.53 -0.7
609,948 - PP_0525 0.53 -0.6
609,981 - PP_0525 0.55 +1.2
610,113 - PP_0525 0.62 +0.2
610,346 + PP_0525 0.74 +0.4
610,347 - PP_0525 0.74 +0.6
610,347 - PP_0525 0.74 +0.3
610,638 + PP_0525 0.89 +0.1
610,722 + -0.0
610,722 + +0.2
610,723 - -0.0
610,743 + -1.5
610,882 - -0.0
610,904 - +1.6
610,904 - +0.1
610,904 - -0.5
610,904 - -1.4
610,904 - -0.3
610,904 - +2.7
610,904 - +1.0
610,904 - -0.5
610,909 - -0.5
610,909 - -2.1
610,909 - +0.2

Or see this region's nucleotide sequence