Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5195 and Atu5196 are separated by 124 nucleotides Atu5196 and Atu5197 are separated by 60 nucleotides
Atu5195: Atu5195 - LysR family transcriptional regulator, at 191,259 to 192,176
Atu5195
Atu5196: Atu5196 - hypothetical protein, at 192,301 to 193,017
Atu5196
Atu5197: Atu5197 - LysR family transcriptional regulator, at 193,078 to 194,055
Atu5197
Position (kb) 192
193
194 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 191.306 kb on - strand at 191.316 kb on - strand at 191.330 kb on + strand at 191.401 kb on - strand, within Atu5195 at 191.493 kb on + strand, within Atu5195 at 191.493 kb on + strand, within Atu5195 at 191.565 kb on + strand, within Atu5195 at 191.574 kb on - strand, within Atu5195 at 191.631 kb on - strand, within Atu5195 at 191.706 kb on + strand, within Atu5195 at 191.734 kb on + strand, within Atu5195 at 191.763 kb on + strand, within Atu5195 at 191.763 kb on + strand, within Atu5195 at 191.784 kb on + strand, within Atu5195 at 191.784 kb on + strand, within Atu5195 at 191.787 kb on - strand, within Atu5195 at 191.789 kb on + strand, within Atu5195 at 191.831 kb on - strand, within Atu5195 at 191.860 kb on - strand, within Atu5195 at 191.860 kb on - strand, within Atu5195 at 191.860 kb on - strand, within Atu5195 at 191.908 kb on + strand, within Atu5195 at 191.944 kb on - strand, within Atu5195 at 191.976 kb on - strand, within Atu5195 at 192.002 kb on - strand, within Atu5195 at 192.016 kb on - strand, within Atu5195 at 192.023 kb on + strand, within Atu5195 at 192.145 kb on + strand at 192.160 kb on + strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.170 kb on + strand at 192.268 kb on + strand at 192.361 kb on - strand at 192.372 kb on + strand at 192.389 kb on - strand, within Atu5196 at 192.389 kb on - strand, within Atu5196 at 192.389 kb on - strand, within Atu5196 at 192.389 kb on - strand, within Atu5196 at 192.401 kb on + strand, within Atu5196 at 192.410 kb on + strand, within Atu5196 at 192.410 kb on + strand, within Atu5196 at 192.414 kb on - strand, within Atu5196 at 192.417 kb on + strand, within Atu5196 at 192.544 kb on - strand, within Atu5196 at 192.692 kb on + strand, within Atu5196 at 192.692 kb on + strand, within Atu5196 at 192.955 kb on - strand at 193.046 kb on - strand at 193.087 kb on - strand at 193.121 kb on - strand at 193.168 kb on + strand at 193.168 kb on + strand at 193.199 kb on + strand, within Atu5197 at 193.199 kb on + strand, within Atu5197 at 193.207 kb on - strand, within Atu5197 at 193.224 kb on + strand, within Atu5197 at 193.224 kb on + strand, within Atu5197 at 193.232 kb on - strand, within Atu5197 at 193.232 kb on - strand, within Atu5197 at 193.251 kb on + strand, within Atu5197 at 193.251 kb on - strand, within Atu5197 at 193.278 kb on - strand, within Atu5197 at 193.410 kb on + strand, within Atu5197 at 193.418 kb on - strand, within Atu5197 at 193.419 kb on - strand, within Atu5197 at 193.419 kb on - strand, within Atu5197 at 193.544 kb on + strand, within Atu5197 at 193.641 kb on - strand, within Atu5197 at 193.806 kb on + strand, within Atu5197 at 193.838 kb on - strand, within Atu5197 at 193.853 kb on - strand, within Atu5197 at 193.917 kb on - strand, within Atu5197 at 193.944 kb on - strand, within Atu5197 at 193.949 kb on - strand, within Atu5197 at 193.949 kb on - strand, within Atu5197
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 191,306 - +0.7 191,316 - +2.8 191,330 + +0.7 191,401 - Atu5195 0.15 -1.9 191,493 + Atu5195 0.25 +0.2 191,493 + Atu5195 0.25 +0.3 191,565 + Atu5195 0.33 -1.2 191,574 - Atu5195 0.34 +0.5 191,631 - Atu5195 0.41 -0.5 191,706 + Atu5195 0.49 -2.0 191,734 + Atu5195 0.52 -0.5 191,763 + Atu5195 0.55 -0.1 191,763 + Atu5195 0.55 -0.8 191,784 + Atu5195 0.57 +1.2 191,784 + Atu5195 0.57 -0.3 191,787 - Atu5195 0.58 -0.4 191,789 + Atu5195 0.58 -1.8 191,831 - Atu5195 0.62 +3.4 191,860 - Atu5195 0.65 +0.2 191,860 - Atu5195 0.65 -0.1 191,860 - Atu5195 0.65 +0.4 191,908 + Atu5195 0.71 -0.8 191,944 - Atu5195 0.75 -0.0 191,976 - Atu5195 0.78 -0.8 192,002 - Atu5195 0.81 +0.0 192,016 - Atu5195 0.82 +0.8 192,023 + Atu5195 0.83 -1.5 192,145 + +1.0 192,160 + +0.1 192,168 - +0.4 192,168 - +0.1 192,170 + -0.0 192,268 + -1.3 192,361 - +1.3 192,372 + -0.4 192,389 - Atu5196 0.12 +1.8 192,389 - Atu5196 0.12 -0.9 192,389 - Atu5196 0.12 -1.3 192,389 - Atu5196 0.12 +0.7 192,401 + Atu5196 0.14 +0.1 192,410 + Atu5196 0.15 +0.2 192,410 + Atu5196 0.15 -0.4 192,414 - Atu5196 0.16 +0.7 192,417 + Atu5196 0.16 +2.5 192,544 - Atu5196 0.34 +1.6 192,692 + Atu5196 0.55 -0.4 192,692 + Atu5196 0.55 -0.4 192,955 - +1.2 193,046 - +1.2 193,087 - +0.1 193,121 - -1.0 193,168 + +1.2 193,168 + -0.1 193,199 + Atu5197 0.12 +1.2 193,199 + Atu5197 0.12 -1.8 193,207 - Atu5197 0.13 -2.0 193,224 + Atu5197 0.15 -0.7 193,224 + Atu5197 0.15 -1.1 193,232 - Atu5197 0.16 +0.2 193,232 - Atu5197 0.16 +0.4 193,251 + Atu5197 0.18 -0.2 193,251 - Atu5197 0.18 -0.8 193,278 - Atu5197 0.20 +0.4 193,410 + Atu5197 0.34 +1.0 193,418 - Atu5197 0.35 -1.5 193,419 - Atu5197 0.35 +0.1 193,419 - Atu5197 0.35 +2.7 193,544 + Atu5197 0.48 -1.8 193,641 - Atu5197 0.58 +0.1 193,806 + Atu5197 0.74 +0.7 193,838 - Atu5197 0.78 +4.1 193,853 - Atu5197 0.79 -0.5 193,917 - Atu5197 0.86 -0.4 193,944 - Atu5197 0.89 -1.7 193,949 - Atu5197 0.89 -0.6 193,949 - Atu5197 0.89 -0.8
Or see this region's nucleotide sequence