Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3787 and Atu3788 are separated by 54 nucleotides Atu3788 and Atu3789 are separated by 12 nucleotides Atu3789 and Atu3790 are separated by 217 nucleotides
Atu3787: Atu3787 - two component sensor kinase, at 875,369 to 878,071
Atu3787
Atu3788: Atu3788 - potassium-transporting ATPase subunit C, at 878,126 to 878,692
Atu3788
Atu3789: Atu3789 - potassium-transporting ATPase subunit B, at 878,705 to 880,789
Atu3789
Atu3790: Atu3790 - potassium-transporting ATPase subunit A, at 881,007 to 882,710
Atu3790
Position (kb) 878
879
880
881 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 877.713 kb on + strand, within Atu3787 at 877.713 kb on + strand, within Atu3787 at 877.721 kb on - strand, within Atu3787 at 877.750 kb on - strand, within Atu3787 at 877.760 kb on + strand, within Atu3787 at 877.792 kb on + strand, within Atu3787 at 877.809 kb on + strand at 877.831 kb on + strand at 877.839 kb on - strand at 878.069 kb on + strand at 878.089 kb on + strand at 878.241 kb on + strand, within Atu3788 at 878.336 kb on + strand, within Atu3788 at 878.442 kb on - strand, within Atu3788 at 878.459 kb on + strand, within Atu3788 at 878.467 kb on - strand, within Atu3788 at 878.499 kb on - strand, within Atu3788 at 878.511 kb on + strand, within Atu3788 at 878.523 kb on - strand, within Atu3788 at 878.607 kb on - strand, within Atu3788 at 878.618 kb on - strand, within Atu3788 at 878.657 kb on + strand at 878.711 kb on - strand at 878.711 kb on - strand at 878.713 kb on + strand at 878.720 kb on - strand at 878.861 kb on - strand at 878.919 kb on + strand, within Atu3789 at 878.920 kb on - strand, within Atu3789 at 878.927 kb on - strand, within Atu3789 at 879.031 kb on - strand, within Atu3789 at 879.113 kb on + strand, within Atu3789 at 879.146 kb on + strand, within Atu3789 at 879.146 kb on + strand, within Atu3789 at 879.213 kb on + strand, within Atu3789 at 879.221 kb on - strand, within Atu3789 at 879.225 kb on + strand, within Atu3789 at 879.225 kb on + strand, within Atu3789 at 879.225 kb on + strand, within Atu3789 at 879.227 kb on - strand, within Atu3789 at 879.243 kb on - strand, within Atu3789 at 879.614 kb on + strand, within Atu3789 at 879.953 kb on + strand, within Atu3789 at 880.003 kb on + strand, within Atu3789 at 880.003 kb on + strand, within Atu3789 at 880.007 kb on - strand, within Atu3789 at 880.011 kb on - strand, within Atu3789 at 880.105 kb on + strand, within Atu3789 at 880.120 kb on + strand, within Atu3789 at 880.132 kb on - strand, within Atu3789 at 880.159 kb on - strand, within Atu3789 at 880.232 kb on + strand, within Atu3789 at 880.238 kb on + strand, within Atu3789 at 880.322 kb on - strand, within Atu3789 at 880.411 kb on + strand, within Atu3789 at 880.419 kb on - strand, within Atu3789 at 880.671 kb on - strand at 880.698 kb on + strand at 880.701 kb on - strand at 880.701 kb on - strand at 880.804 kb on + strand at 880.942 kb on - strand at 880.956 kb on + strand at 881.005 kb on + strand at 881.005 kb on + strand at 881.013 kb on - strand at 881.013 kb on - strand at 881.034 kb on - strand at 881.037 kb on + strand at 881.039 kb on + strand at 881.076 kb on + strand at 881.099 kb on - strand at 881.146 kb on + strand at 881.209 kb on - strand, within Atu3790 at 881.254 kb on + strand, within Atu3790 at 881.286 kb on + strand, within Atu3790 at 881.380 kb on + strand, within Atu3790 at 881.385 kb on + strand, within Atu3790 at 881.385 kb on + strand, within Atu3790 at 881.393 kb on - strand, within Atu3790 at 881.393 kb on - strand, within Atu3790 at 881.420 kb on - strand, within Atu3790 at 881.547 kb on - strand, within Atu3790 at 881.552 kb on - strand, within Atu3790 at 881.552 kb on - strand, within Atu3790 at 881.601 kb on - strand, within Atu3790 at 881.626 kb on - strand, within Atu3790 at 881.661 kb on + strand, within Atu3790 at 881.745 kb on + strand, within Atu3790 at 881.759 kb on + strand, within Atu3790 at 881.767 kb on - strand, within Atu3790 at 881.767 kb on - strand, within Atu3790
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 877,713 + Atu3787 0.87 -0.6 877,713 + Atu3787 0.87 -0.5 877,721 - Atu3787 0.87 -0.1 877,750 - Atu3787 0.88 -0.7 877,760 + Atu3787 0.88 -1.1 877,792 + Atu3787 0.90 -1.0 877,809 + -0.9 877,831 + -0.1 877,839 - +0.1 878,069 + -1.4 878,089 + -0.3 878,241 + Atu3788 0.20 +0.0 878,336 + Atu3788 0.37 +0.1 878,442 - Atu3788 0.56 +0.5 878,459 + Atu3788 0.59 +0.6 878,467 - Atu3788 0.60 -0.7 878,499 - Atu3788 0.66 -0.9 878,511 + Atu3788 0.68 +1.2 878,523 - Atu3788 0.70 -0.4 878,607 - Atu3788 0.85 +0.1 878,618 - Atu3788 0.87 -0.1 878,657 + +1.4 878,711 - +0.4 878,711 - -1.5 878,713 + -1.5 878,720 - +0.6 878,861 - +1.2 878,919 + Atu3789 0.10 -0.0 878,920 - Atu3789 0.10 -0.8 878,927 - Atu3789 0.11 -0.9 879,031 - Atu3789 0.16 -0.9 879,113 + Atu3789 0.20 -2.6 879,146 + Atu3789 0.21 -1.0 879,146 + Atu3789 0.21 -0.1 879,213 + Atu3789 0.24 +0.3 879,221 - Atu3789 0.25 -0.4 879,225 + Atu3789 0.25 -0.1 879,225 + Atu3789 0.25 -0.8 879,225 + Atu3789 0.25 -0.2 879,227 - Atu3789 0.25 +1.2 879,243 - Atu3789 0.26 +0.0 879,614 + Atu3789 0.44 -0.9 879,953 + Atu3789 0.60 -0.6 880,003 + Atu3789 0.62 -0.3 880,003 + Atu3789 0.62 -0.5 880,007 - Atu3789 0.62 +0.4 880,011 - Atu3789 0.63 +5.7 880,105 + Atu3789 0.67 -2.7 880,120 + Atu3789 0.68 -1.3 880,132 - Atu3789 0.68 -1.6 880,159 - Atu3789 0.70 -0.2 880,232 + Atu3789 0.73 +0.0 880,238 + Atu3789 0.74 -1.1 880,322 - Atu3789 0.78 +1.4 880,411 + Atu3789 0.82 -0.0 880,419 - Atu3789 0.82 +0.5 880,671 - +0.0 880,698 + -0.4 880,701 - -0.1 880,701 - -0.5 880,804 + +2.5 880,942 - +0.5 880,956 + -0.6 881,005 + +0.6 881,005 + -0.0 881,013 - +1.2 881,013 - -0.3 881,034 - +1.9 881,037 + -0.4 881,039 + -0.6 881,076 + -0.3 881,099 - -0.9 881,146 + -1.6 881,209 - Atu3790 0.12 -0.5 881,254 + Atu3790 0.14 -0.0 881,286 + Atu3790 0.16 -0.3 881,380 + Atu3790 0.22 +2.6 881,385 + Atu3790 0.22 -0.3 881,385 + Atu3790 0.22 -2.2 881,393 - Atu3790 0.23 -1.4 881,393 - Atu3790 0.23 -1.4 881,420 - Atu3790 0.24 -0.1 881,547 - Atu3790 0.32 -0.3 881,552 - Atu3790 0.32 -1.3 881,552 - Atu3790 0.32 -0.3 881,601 - Atu3790 0.35 -1.9 881,626 - Atu3790 0.36 -0.9 881,661 + Atu3790 0.38 +0.3 881,745 + Atu3790 0.43 +0.2 881,759 + Atu3790 0.44 +0.6 881,767 - Atu3790 0.45 -0.5 881,767 - Atu3790 0.45 -0.6
Or see this region's nucleotide sequence