Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0868 and Atu0869 are separated by 48 nucleotides Atu0869 and Atu0870 are separated by 5 nucleotides
Atu0868: Atu0868 - hypothetical protein, at 864,882 to 865,589
Atu0868
Atu0869: Atu0869 - hypothetical protein, at 865,638 to 866,006
Atu0869
Atu0870: Atu0870 - trans-aconitate methyltransferase, at 866,012 to 866,782
Atu0870
Position (kb) 865
866
867 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 864.654 kb on - strand at 864.748 kb on + strand at 864.761 kb on - strand at 864.761 kb on - strand at 864.801 kb on + strand at 864.809 kb on - strand at 864.832 kb on + strand at 864.850 kb on + strand at 864.850 kb on + strand at 864.850 kb on + strand at 864.981 kb on - strand, within Atu0868 at 865.039 kb on - strand, within Atu0868 at 865.047 kb on + strand, within Atu0868 at 865.122 kb on + strand, within Atu0868 at 865.138 kb on + strand, within Atu0868 at 865.146 kb on - strand, within Atu0868 at 865.166 kb on + strand, within Atu0868 at 865.169 kb on - strand, within Atu0868 at 865.248 kb on - strand, within Atu0868 at 865.263 kb on + strand, within Atu0868 at 865.263 kb on + strand, within Atu0868 at 865.263 kb on + strand, within Atu0868 at 865.271 kb on - strand, within Atu0868 at 865.276 kb on - strand, within Atu0868 at 865.283 kb on - strand, within Atu0868 at 865.325 kb on + strand, within Atu0868 at 865.333 kb on - strand, within Atu0868 at 865.412 kb on + strand, within Atu0868 at 865.430 kb on - strand, within Atu0868 at 865.441 kb on - strand, within Atu0868 at 865.635 kb on + strand at 865.635 kb on + strand at 865.643 kb on - strand at 865.661 kb on + strand at 865.694 kb on + strand, within Atu0869 at 865.694 kb on + strand, within Atu0869 at 865.694 kb on + strand, within Atu0869 at 865.700 kb on - strand, within Atu0869 at 865.702 kb on - strand, within Atu0869 at 865.704 kb on + strand, within Atu0869 at 865.709 kb on + strand, within Atu0869 at 865.717 kb on - strand, within Atu0869 at 865.733 kb on - strand, within Atu0869 at 865.757 kb on - strand, within Atu0869 at 865.781 kb on - strand, within Atu0869 at 865.794 kb on - strand, within Atu0869 at 865.806 kb on - strand, within Atu0869 at 865.949 kb on + strand, within Atu0869 at 865.949 kb on - strand, within Atu0869 at 865.980 kb on - strand at 865.994 kb on - strand at 866.010 kb on + strand at 866.122 kb on - strand, within Atu0870 at 866.216 kb on + strand, within Atu0870 at 866.236 kb on - strand, within Atu0870 at 866.288 kb on + strand, within Atu0870 at 866.338 kb on - strand, within Atu0870 at 866.470 kb on - strand, within Atu0870 at 866.482 kb on + strand, within Atu0870 at 866.498 kb on - strand, within Atu0870 at 866.598 kb on - strand, within Atu0870 at 866.660 kb on - strand, within Atu0870 at 866.669 kb on + strand, within Atu0870 at 866.811 kb on + strand at 866.982 kb on + strand at 866.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 864,654 - +3.0 864,748 + -2.0 864,761 - +1.6 864,761 - +0.7 864,801 + -0.8 864,809 - +0.4 864,832 + +0.7 864,850 + -0.1 864,850 + -0.3 864,850 + +1.0 864,981 - Atu0868 0.14 -1.7 865,039 - Atu0868 0.22 +0.1 865,047 + Atu0868 0.23 +0.0 865,122 + Atu0868 0.34 +0.6 865,138 + Atu0868 0.36 -0.8 865,146 - Atu0868 0.37 -0.4 865,166 + Atu0868 0.40 -1.6 865,169 - Atu0868 0.41 -0.5 865,248 - Atu0868 0.52 +2.1 865,263 + Atu0868 0.54 -1.7 865,263 + Atu0868 0.54 +0.1 865,263 + Atu0868 0.54 +1.2 865,271 - Atu0868 0.55 +1.4 865,276 - Atu0868 0.56 -0.6 865,283 - Atu0868 0.57 -1.2 865,325 + Atu0868 0.63 +0.2 865,333 - Atu0868 0.64 -0.5 865,412 + Atu0868 0.75 -0.3 865,430 - Atu0868 0.77 +0.4 865,441 - Atu0868 0.79 +0.5 865,635 + +1.1 865,635 + +1.6 865,643 - +0.7 865,661 + -0.1 865,694 + Atu0869 0.15 -1.5 865,694 + Atu0869 0.15 +1.3 865,694 + Atu0869 0.15 -0.2 865,700 - Atu0869 0.17 +0.5 865,702 - Atu0869 0.17 -1.6 865,704 + Atu0869 0.18 +1.1 865,709 + Atu0869 0.19 -0.3 865,717 - Atu0869 0.21 -0.9 865,733 - Atu0869 0.26 -0.1 865,757 - Atu0869 0.32 -0.8 865,781 - Atu0869 0.39 -0.7 865,794 - Atu0869 0.42 -2.3 865,806 - Atu0869 0.46 +0.1 865,949 + Atu0869 0.84 +1.5 865,949 - Atu0869 0.84 -0.7 865,980 - -1.6 865,994 - -1.0 866,010 + -0.3 866,122 - Atu0870 0.14 -0.4 866,216 + Atu0870 0.26 +0.1 866,236 - Atu0870 0.29 +5.4 866,288 + Atu0870 0.36 +0.4 866,338 - Atu0870 0.42 -1.1 866,470 - Atu0870 0.59 +0.7 866,482 + Atu0870 0.61 +0.6 866,498 - Atu0870 0.63 -0.0 866,598 - Atu0870 0.76 +2.0 866,660 - Atu0870 0.84 +1.9 866,669 + Atu0870 0.85 +0.4 866,811 + -0.6 866,982 + -0.5 866,998 - -0.3
Or see this region's nucleotide sequence