Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0736 and Atu0738 are separated by 278 nucleotides Atu0738 and Atu0739 are separated by 69 nucleotides
Atu0736: Atu0736 - hemolysin, at 735,570 to 736,322
Atu0736
Atu0738: Atu0738 - chemotaxis methyl-accepting protein, at 736,601 to 738,622
Atu0738
Atu0739: Atu0739 - hypothetical protein, at 738,692 to 739,654
Atu0739
Position (kb) 736
737
738
739 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 735.640 kb on - strand at 735.717 kb on + strand, within Atu0736 at 735.841 kb on + strand, within Atu0736 at 735.919 kb on - strand, within Atu0736 at 735.920 kb on + strand, within Atu0736 at 735.963 kb on + strand, within Atu0736 at 735.988 kb on - strand, within Atu0736 at 736.046 kb on - strand, within Atu0736 at 736.079 kb on - strand, within Atu0736 at 736.105 kb on + strand, within Atu0736 at 736.110 kb on - strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.461 kb on - strand at 736.592 kb on - strand at 736.633 kb on + strand at 736.699 kb on + strand at 736.708 kb on - strand at 736.758 kb on - strand at 736.775 kb on - strand at 736.782 kb on + strand at 737.094 kb on + strand, within Atu0738 at 737.100 kb on - strand, within Atu0738 at 737.179 kb on - strand, within Atu0738 at 737.210 kb on + strand, within Atu0738 at 737.218 kb on - strand, within Atu0738 at 737.218 kb on - strand, within Atu0738 at 737.223 kb on - strand, within Atu0738 at 737.421 kb on - strand, within Atu0738 at 737.566 kb on - strand, within Atu0738 at 737.622 kb on - strand, within Atu0738 at 737.758 kb on - strand, within Atu0738 at 737.774 kb on + strand, within Atu0738 at 737.793 kb on + strand, within Atu0738 at 737.976 kb on + strand, within Atu0738 at 738.052 kb on + strand, within Atu0738 at 738.128 kb on - strand, within Atu0738 at 738.128 kb on - strand, within Atu0738 at 738.142 kb on + strand, within Atu0738 at 738.201 kb on - strand, within Atu0738 at 738.215 kb on - strand, within Atu0738 at 738.254 kb on + strand, within Atu0738 at 738.268 kb on + strand, within Atu0738 at 738.289 kb on - strand, within Atu0738 at 738.347 kb on + strand, within Atu0738 at 738.355 kb on - strand, within Atu0738 at 738.355 kb on - strand, within Atu0738 at 738.436 kb on - strand at 738.485 kb on + strand at 738.545 kb on + strand at 738.599 kb on + strand at 738.599 kb on + strand at 738.607 kb on - strand at 738.693 kb on + strand at 738.935 kb on + strand, within Atu0739 at 739.104 kb on - strand, within Atu0739 at 739.132 kb on + strand, within Atu0739 at 739.248 kb on + strand, within Atu0739 at 739.289 kb on - strand, within Atu0739 at 739.290 kb on + strand, within Atu0739 at 739.460 kb on - strand, within Atu0739
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 735,640 - -1.0 735,717 + Atu0736 0.20 -2.6 735,841 + Atu0736 0.36 -0.2 735,919 - Atu0736 0.46 +0.3 735,920 + Atu0736 0.46 +0.0 735,963 + Atu0736 0.52 -0.6 735,988 - Atu0736 0.56 -0.0 736,046 - Atu0736 0.63 -0.4 736,079 - Atu0736 0.68 +0.3 736,105 + Atu0736 0.71 -0.4 736,110 - Atu0736 0.72 -1.8 736,129 + Atu0736 0.74 -0.4 736,129 + Atu0736 0.74 +0.0 736,129 + Atu0736 0.74 -0.0 736,129 + Atu0736 0.74 -0.9 736,129 + Atu0736 0.74 +1.7 736,137 - Atu0736 0.75 -0.6 736,137 - Atu0736 0.75 +0.2 736,137 - Atu0736 0.75 +0.0 736,461 - -0.3 736,592 - +0.6 736,633 + +0.0 736,699 + -0.3 736,708 - -0.2 736,758 - +0.2 736,775 - +0.1 736,782 + +3.6 737,094 + Atu0738 0.24 +0.8 737,100 - Atu0738 0.25 -1.4 737,179 - Atu0738 0.29 -0.7 737,210 + Atu0738 0.30 +0.1 737,218 - Atu0738 0.31 -0.6 737,218 - Atu0738 0.31 -0.3 737,223 - Atu0738 0.31 +0.0 737,421 - Atu0738 0.41 -1.0 737,566 - Atu0738 0.48 -1.0 737,622 - Atu0738 0.50 -0.1 737,758 - Atu0738 0.57 +0.4 737,774 + Atu0738 0.58 +0.3 737,793 + Atu0738 0.59 -0.1 737,976 + Atu0738 0.68 -2.5 738,052 + Atu0738 0.72 -1.2 738,128 - Atu0738 0.76 -0.4 738,128 - Atu0738 0.76 -0.4 738,142 + Atu0738 0.76 -0.4 738,201 - Atu0738 0.79 +0.9 738,215 - Atu0738 0.80 -1.1 738,254 + Atu0738 0.82 -0.5 738,268 + Atu0738 0.82 -0.3 738,289 - Atu0738 0.83 +0.3 738,347 + Atu0738 0.86 +0.7 738,355 - Atu0738 0.87 -1.5 738,355 - Atu0738 0.87 +0.4 738,436 - +0.2 738,485 + +0.4 738,545 + +0.8 738,599 + -0.3 738,599 + +0.2 738,607 - -0.4 738,693 + +0.1 738,935 + Atu0739 0.25 +0.6 739,104 - Atu0739 0.43 -0.1 739,132 + Atu0739 0.46 +0.4 739,248 + Atu0739 0.58 +1.1 739,289 - Atu0739 0.62 +0.8 739,290 + Atu0739 0.62 -0.8 739,460 - Atu0739 0.80 -0.2
Or see this region's nucleotide sequence