Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0446 and Atu8082 are separated by 158 nucleotides Atu8082 and Atu0447 are separated by 56 nucleotides Atu0447 and Atu0448 overlap by 4 nucleotides Atu0448 and Atu0449 overlap by 1 nucleotides
Atu0446: Atu0446 - hypothetical protein, at 440,613 to 441,758
Atu0446
Atu8082: Atu8082 - hypothetical protein, at 441,917 to 442,468
Atu8082
Atu0447: Atu0447 - hypothetical protein, at 442,525 to 443,106
Atu0447
Atu0448: Atu0448 - hypothetical protein, at 443,103 to 443,396
Atu0448
Atu0449: Atu0449 - hypothetical protein, at 443,396 to 444,616
Atu0449
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1 at 441.559 kb on - strand, within Atu0446 at 441.632 kb on + strand, within Atu0446 at 441.828 kb on + strand at 441.836 kb on - strand at 441.836 kb on - strand at 442.022 kb on + strand, within Atu8082 at 442.032 kb on + strand, within Atu8082 at 442.262 kb on - strand, within Atu8082 at 442.729 kb on - strand, within Atu0447 at 442.859 kb on - strand, within Atu0447 at 442.869 kb on + strand, within Atu0447 at 442.956 kb on + strand, within Atu0447 at 443.020 kb on - strand, within Atu0447 at 443.022 kb on + strand, within Atu0447 at 443.058 kb on - strand at 443.191 kb on + strand, within Atu0448 at 443.191 kb on + strand, within Atu0448 at 443.192 kb on - strand, within Atu0448 at 443.293 kb on + strand, within Atu0448 at 443.293 kb on - strand, within Atu0448 at 443.298 kb on + strand, within Atu0448 at 443.336 kb on - strand, within Atu0448 at 443.386 kb on + strand at 443.386 kb on + strand at 443.386 kb on + strand at 443.391 kb on - strand at 443.412 kb on + strand at 443.483 kb on + strand at 443.558 kb on - strand, within Atu0449 at 443.585 kb on + strand, within Atu0449 at 443.713 kb on + strand, within Atu0449 at 443.774 kb on + strand, within Atu0449 at 443.964 kb on - strand, within Atu0449 at 444.008 kb on - strand, within Atu0449 at 444.035 kb on - strand, within Atu0449
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 441,559 - Atu0446 0.83 -0.8 441,632 + Atu0446 0.89 -0.9 441,828 + +1.2 441,836 - -1.0 441,836 - -1.4 442,022 + Atu8082 0.19 -1.5 442,032 + Atu8082 0.21 -0.3 442,262 - Atu8082 0.62 -1.1 442,729 - Atu0447 0.35 -0.2 442,859 - Atu0447 0.57 -0.5 442,869 + Atu0447 0.59 -1.7 442,956 + Atu0447 0.74 -0.5 443,020 - Atu0447 0.85 -1.2 443,022 + Atu0447 0.85 -0.9 443,058 - -1.2 443,191 + Atu0448 0.30 +0.1 443,191 + Atu0448 0.30 -1.4 443,192 - Atu0448 0.30 +0.7 443,293 + Atu0448 0.65 -1.2 443,293 - Atu0448 0.65 -0.6 443,298 + Atu0448 0.66 -0.9 443,336 - Atu0448 0.79 +0.3 443,386 + -0.5 443,386 + -0.5 443,386 + +0.2 443,391 - -0.5 443,412 + +1.1 443,483 + -0.3 443,558 - Atu0449 0.13 -0.1 443,585 + Atu0449 0.15 -2.0 443,713 + Atu0449 0.26 -2.4 443,774 + Atu0449 0.31 +0.3 443,964 - Atu0449 0.47 -1.9 444,008 - Atu0449 0.50 +0.8 444,035 - Atu0449 0.52 -0.0
Or see this region's nucleotide sequence