Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0308 and Atu0309 are separated by 109 nucleotides Atu0309 and Atu0310 are separated by 242 nucleotides Atu0310 and Atu0311 are separated by 183 nucleotides
Atu0308: Atu0308 - ABC transporter, nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate), at 300,340 to 301,440
Atu0308
Atu0309: Atu0309 - hypothetical protein, at 301,550 to 302,062
Atu0309
Atu0310: Atu0310 - glutathione synthetase, at 302,305 to 303,264
Atu0310
Atu0311: Atu0311 - hypothetical protein, at 303,448 to 304,980
Atu0311
Position (kb) 302
303
304 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 301.373 kb on + strand at 301.407 kb on - strand at 301.425 kb on + strand at 301.434 kb on + strand at 301.436 kb on + strand at 301.442 kb on - strand at 301.576 kb on + strand at 301.629 kb on + strand, within Atu0309 at 301.631 kb on + strand, within Atu0309 at 301.685 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.727 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.744 kb on + strand, within Atu0309 at 301.744 kb on + strand, within Atu0309 at 301.744 kb on + strand, within Atu0309 at 301.752 kb on - strand, within Atu0309 at 301.763 kb on + strand, within Atu0309 at 301.768 kb on + strand, within Atu0309 at 301.783 kb on - strand, within Atu0309 at 301.830 kb on - strand, within Atu0309 at 301.873 kb on - strand, within Atu0309 at 301.888 kb on + strand, within Atu0309 at 301.901 kb on - strand, within Atu0309 at 301.901 kb on - strand, within Atu0309 at 301.935 kb on + strand, within Atu0309 at 301.994 kb on + strand, within Atu0309 at 301.999 kb on + strand, within Atu0309 at 301.999 kb on + strand, within Atu0309 at 302.000 kb on + strand, within Atu0309 at 302.007 kb on - strand, within Atu0309 at 302.043 kb on + strand at 302.043 kb on + strand at 302.051 kb on - strand at 302.051 kb on - strand at 302.057 kb on + strand at 302.076 kb on - strand at 302.093 kb on + strand at 302.093 kb on + strand at 302.096 kb on - strand at 302.096 kb on - strand at 302.101 kb on + strand at 302.218 kb on + strand at 302.218 kb on + strand at 302.255 kb on + strand at 303.255 kb on + strand at 303.449 kb on + strand at 303.452 kb on - strand at 303.459 kb on + strand at 303.459 kb on + strand at 303.459 kb on + strand at 303.459 kb on + strand at 303.459 kb on + strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.505 kb on + strand at 303.513 kb on - strand at 303.588 kb on + strand at 303.592 kb on - strand at 303.596 kb on - strand at 303.598 kb on + strand at 303.608 kb on + strand, within Atu0311 at 303.608 kb on + strand, within Atu0311 at 303.608 kb on + strand, within Atu0311 at 303.613 kb on + strand, within Atu0311 at 303.621 kb on - strand, within Atu0311 at 303.718 kb on + strand, within Atu0311 at 303.726 kb on - strand, within Atu0311 at 303.806 kb on - strand, within Atu0311 at 303.846 kb on + strand, within Atu0311 at 303.847 kb on + strand, within Atu0311 at 303.847 kb on + strand, within Atu0311 at 303.855 kb on - strand, within Atu0311 at 303.855 kb on - strand, within Atu0311 at 303.855 kb on - strand, within Atu0311 at 303.855 kb on - strand, within Atu0311 at 303.855 kb on - strand, within Atu0311 at 303.916 kb on - strand, within Atu0311 at 303.967 kb on - strand, within Atu0311 at 303.979 kb on + strand, within Atu0311 at 303.984 kb on - strand, within Atu0311 at 304.038 kb on - strand, within Atu0311 at 304.084 kb on - strand, within Atu0311 at 304.129 kb on + strand, within Atu0311 at 304.139 kb on + strand, within Atu0311 at 304.202 kb on - strand, within Atu0311 at 304.233 kb on + strand, within Atu0311 at 304.242 kb on + strand, within Atu0311 at 304.250 kb on - strand, within Atu0311 at 304.252 kb on + strand, within Atu0311
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 301,373 + +0.5 301,407 - -0.1 301,425 + +0.3 301,434 + -0.4 301,436 + +0.8 301,442 - +2.0 301,576 + +3.3 301,629 + Atu0309 0.15 +0.2 301,631 + Atu0309 0.16 +0.6 301,685 + Atu0309 0.26 +2.3 301,721 + Atu0309 0.33 +0.0 301,721 + Atu0309 0.33 -0.0 301,721 + Atu0309 0.33 -1.3 301,721 + Atu0309 0.33 -0.7 301,721 + Atu0309 0.33 +1.2 301,727 - Atu0309 0.35 -0.6 301,729 - Atu0309 0.35 +1.7 301,729 - Atu0309 0.35 -0.4 301,729 - Atu0309 0.35 +0.1 301,729 - Atu0309 0.35 -1.6 301,729 - Atu0309 0.35 -0.5 301,744 + Atu0309 0.38 -0.1 301,744 + Atu0309 0.38 +1.5 301,744 + Atu0309 0.38 -0.0 301,752 - Atu0309 0.39 -0.1 301,763 + Atu0309 0.42 -0.3 301,768 + Atu0309 0.42 -0.2 301,783 - Atu0309 0.45 -0.1 301,830 - Atu0309 0.55 -0.5 301,873 - Atu0309 0.63 +0.5 301,888 + Atu0309 0.66 -0.3 301,901 - Atu0309 0.68 -0.2 301,901 - Atu0309 0.68 -0.1 301,935 + Atu0309 0.75 -0.8 301,994 + Atu0309 0.87 +0.6 301,999 + Atu0309 0.88 +3.2 301,999 + Atu0309 0.88 -0.5 302,000 + Atu0309 0.88 +0.1 302,007 - Atu0309 0.89 +0.0 302,043 + -0.3 302,043 + +0.7 302,051 - -0.4 302,051 - -0.2 302,057 + -0.9 302,076 - -0.3 302,093 + -0.5 302,093 + -0.1 302,096 - -0.2 302,096 - +0.1 302,101 + -0.0 302,218 + -0.6 302,218 + -0.3 302,255 + -0.1 303,255 + -0.5 303,449 + +2.1 303,452 - -0.1 303,459 + -1.5 303,459 + -0.1 303,459 + +0.2 303,459 + +0.2 303,459 + -1.1 303,467 - +0.4 303,467 - +1.4 303,467 - -0.8 303,467 - +1.8 303,467 - -0.4 303,467 - -0.7 303,467 - -0.5 303,467 - +1.4 303,467 - -0.6 303,467 - -1.2 303,467 - +0.5 303,505 + -0.0 303,513 - +0.8 303,588 + +1.4 303,592 - +0.3 303,596 - +0.7 303,598 + +0.4 303,608 + Atu0311 0.10 +0.5 303,608 + Atu0311 0.10 -0.1 303,608 + Atu0311 0.10 -0.2 303,613 + Atu0311 0.11 -0.9 303,621 - Atu0311 0.11 -0.7 303,718 + Atu0311 0.18 -0.3 303,726 - Atu0311 0.18 +0.7 303,806 - Atu0311 0.23 -0.6 303,846 + Atu0311 0.26 +1.2 303,847 + Atu0311 0.26 -1.2 303,847 + Atu0311 0.26 -0.5 303,855 - Atu0311 0.27 -0.1 303,855 - Atu0311 0.27 +0.6 303,855 - Atu0311 0.27 -0.6 303,855 - Atu0311 0.27 +1.2 303,855 - Atu0311 0.27 +0.1 303,916 - Atu0311 0.31 -0.8 303,967 - Atu0311 0.34 -0.5 303,979 + Atu0311 0.35 -0.0 303,984 - Atu0311 0.35 -1.5 304,038 - Atu0311 0.38 -0.1 304,084 - Atu0311 0.41 +0.3 304,129 + Atu0311 0.44 +0.1 304,139 + Atu0311 0.45 -2.5 304,202 - Atu0311 0.49 +3.7 304,233 + Atu0311 0.51 -1.0 304,242 + Atu0311 0.52 +0.7 304,250 - Atu0311 0.52 -0.5 304,252 + Atu0311 0.52 -0.5
Or see this region's nucleotide sequence