Strain Fitness in Pseudomonas putida KT2440 around PP_3778

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3776 and PP_3777 are separated by 5 nucleotidesPP_3777 and PP_3778 are separated by 17 nucleotidesPP_3778 and PP_3779 are separated by 201 nucleotides PP_3776: PP_3776 - putative permease (RarD protein), at 4,304,295 to 4,305,209 _3776 PP_3777: PP_3777 - conserved protein of unknown function, at 4,305,215 to 4,306,054 _3777 PP_3778: PP_3778 - Pyrroline-5-carboxylate reductase, at 4,306,072 to 4,306,866 _3778 PP_3779: PP_3779 - Transcriptional regulator, LysR family, at 4,307,068 to 4,308,000 _3779 Position (kb) 4306 4307Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4305.128 kb on - strandat 4305.128 kb on - strandat 4305.174 kb on + strandat 4305.255 kb on + strandat 4305.256 kb on - strandat 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.368 kb on - strand, within PP_3777at 4305.368 kb on - strand, within PP_3777at 4305.369 kb on + strandat 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.370 kb on - strand, within PP_3777at 4305.370 kb on - strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.442 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.608 kb on + strand, within PP_3777at 4305.608 kb on + strand, within PP_3777at 4305.659 kb on + strand, within PP_3777at 4305.672 kb on + strand, within PP_3777at 4305.672 kb on + strand, within PP_3777at 4305.806 kb on - strand, within PP_3777at 4305.806 kb on - strand, within PP_3777at 4305.818 kb on + strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.833 kb on + strand, within PP_3777at 4305.905 kb on - strand, within PP_3777at 4305.973 kb on + strandat 4305.997 kb on - strandat 4306.003 kb on + strandat 4306.003 kb on + strandat 4306.004 kb on - strandat 4306.006 kb on - strandat 4306.006 kb on - strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.161 kb on + strand, within PP_3778at 4306.258 kb on + strand, within PP_3778at 4306.481 kb on + strand, within PP_3778at 4306.482 kb on - strand, within PP_3778at 4306.482 kb on - strand, within PP_3778at 4306.482 kb on - strand, within PP_3778at 4306.482 kb on - strand, within PP_3778at 4306.484 kb on + strand, within PP_3778at 4306.484 kb on + strand, within PP_3778at 4306.484 kb on + strand, within PP_3778at 4306.485 kb on - strand, within PP_3778at 4306.485 kb on - strand, within PP_3778at 4306.519 kb on - strand, within PP_3778at 4306.519 kb on - strand, within PP_3778at 4306.519 kb on - strand, within PP_3778at 4306.552 kb on + strand, within PP_3778at 4306.553 kb on - strand, within PP_3778at 4306.853 kb on + strandat 4306.853 kb on + strandat 4306.868 kb on + strandat 4306.868 kb on + strandat 4306.868 kb on + strandat 4306.868 kb on + strandat 4306.880 kb on - strandat 4306.900 kb on + strandat 4306.956 kb on + strandat 4306.957 kb on - strandat 4306.957 kb on - strandat 4307.069 kb on + strandat 4307.071 kb on + strandat 4307.072 kb on - strandat 4307.102 kb on + strandat 4307.109 kb on + strandat 4307.109 kb on + strandat 4307.109 kb on + strandat 4307.109 kb on + strandat 4307.110 kb on - strandat 4307.110 kb on - strandat 4307.110 kb on - strandat 4307.110 kb on - strandat 4307.113 kb on + strandat 4307.114 kb on - strandat 4307.135 kb on - strandat 4307.161 kb on + strandat 4307.252 kb on + strand, within PP_3779at 4307.252 kb on + strand, within PP_3779at 4307.253 kb on - strand, within PP_3779at 4307.253 kb on - strand, within PP_3779at 4307.253 kb on - strand, within PP_3779at 4307.256 kb on + strand, within PP_3779at 4307.285 kb on - strand, within PP_3779at 4307.315 kb on - strand, within PP_3779at 4307.317 kb on - strand, within PP_3779at 4307.328 kb on + strand, within PP_3779at 4307.362 kb on + strand, within PP_3779at 4307.363 kb on - strand, within PP_3779at 4307.374 kb on + strand, within PP_3779at 4307.438 kb on - strand, within PP_3779at 4307.460 kb on + strand, within PP_3779at 4307.574 kb on - strand, within PP_3779at 4307.588 kb on - strand, within PP_3779at 4307.637 kb on + strand, within PP_3779at 4307.637 kb on + strand, within PP_3779at 4307.780 kb on + strand, within PP_3779at 4307.780 kb on + strand, within PP_3779at 4307.780 kb on + strand, within PP_3779at 4307.781 kb on - strand, within PP_3779

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Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
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4,305,128 - -2.0
4,305,128 - -0.3
4,305,174 + +0.7
4,305,255 + -0.2
4,305,256 - +0.6
4,305,367 + PP_3777 0.18 -0.7
4,305,367 + PP_3777 0.18 -1.0
4,305,367 + PP_3777 0.18 -0.1
4,305,367 + PP_3777 0.18 -0.4
4,305,368 - PP_3777 0.18 +1.1
4,305,368 - PP_3777 0.18 +0.1
4,305,369 + +0.5
4,305,369 + PP_3777 0.18 -0.1
4,305,369 + PP_3777 0.18 +0.1
4,305,369 + PP_3777 0.18 +3.5
4,305,369 + PP_3777 0.18 -0.3
4,305,369 + PP_3777 0.18 +0.1
4,305,369 + PP_3777 0.18 -0.5
4,305,369 + PP_3777 0.18 -1.2
4,305,370 - PP_3777 0.18 +0.6
4,305,370 - PP_3777 0.18 -1.0
4,305,371 + PP_3777 0.19 -0.4
4,305,371 + PP_3777 0.19 -0.7
4,305,371 + PP_3777 0.19 -0.7
4,305,371 + PP_3777 0.19 -0.4
4,305,371 + PP_3777 0.19 -1.1
4,305,372 - PP_3777 0.19 +0.2
4,305,372 - PP_3777 0.19 +2.5
4,305,372 - PP_3777 0.19 +0.3
4,305,372 - PP_3777 0.19 -0.7
4,305,372 - PP_3777 0.19 -1.5
4,305,441 + PP_3777 0.27 -0.5
4,305,441 + PP_3777 0.27 -0.5
4,305,441 + PP_3777 0.27 -0.2
4,305,442 - PP_3777 0.27 -1.2
4,305,562 - PP_3777 0.41 +1.5
4,305,562 - PP_3777 0.41 -0.2
4,305,562 - PP_3777 0.41 +0.8
4,305,608 + PP_3777 0.47 +0.7
4,305,608 + PP_3777 0.47 -0.5
4,305,659 + PP_3777 0.53 -0.1
4,305,672 + PP_3777 0.54 -1.7
4,305,672 + PP_3777 0.54 -1.0
4,305,806 - PP_3777 0.70 +0.3
4,305,806 - PP_3777 0.70 +1.0
4,305,818 + PP_3777 0.72 -0.2
4,305,819 - PP_3777 0.72 +0.7
4,305,819 - PP_3777 0.72 -0.0
4,305,819 - PP_3777 0.72 -0.4
4,305,819 - PP_3777 0.72 +0.6
4,305,833 + PP_3777 0.74 -1.4
4,305,905 - PP_3777 0.82 +0.2
4,305,973 + -0.5
4,305,997 - +0.9
4,306,003 + -0.4
4,306,003 + -0.4
4,306,004 - +0.3
4,306,006 - +0.6
4,306,006 - +0.6
4,306,045 + -0.6
4,306,045 + +0.6
4,306,045 + -0.2
4,306,045 + -0.1
4,306,046 - +0.2
4,306,046 - +0.5
4,306,046 - -0.6
4,306,046 - +0.1
4,306,046 - +1.0
4,306,046 - -0.1
4,306,046 - +0.3
4,306,161 + PP_3778 0.11 -0.2
4,306,258 + PP_3778 0.23 +0.6
4,306,481 + PP_3778 0.51 -0.1
4,306,482 - PP_3778 0.52 -0.2
4,306,482 - PP_3778 0.52 +0.9
4,306,482 - PP_3778 0.52 +0.5
4,306,482 - PP_3778 0.52 +0.7
4,306,484 + PP_3778 0.52 +0.2
4,306,484 + PP_3778 0.52 +1.8
4,306,484 + PP_3778 0.52 +1.0
4,306,485 - PP_3778 0.52 -0.1
4,306,485 - PP_3778 0.52 +0.5
4,306,519 - PP_3778 0.56 +1.2
4,306,519 - PP_3778 0.56 +1.1
4,306,519 - PP_3778 0.56 +0.6
4,306,552 + PP_3778 0.60 -0.5
4,306,553 - PP_3778 0.61 +0.2
4,306,853 + +0.1
4,306,853 + +0.4
4,306,868 + -0.1
4,306,868 + -0.7
4,306,868 + -0.2
4,306,868 + +0.8
4,306,880 - +0.2
4,306,900 + +0.6
4,306,956 + +0.4
4,306,957 - -0.4
4,306,957 - +0.2
4,307,069 + -0.2
4,307,071 + -0.1
4,307,072 - +1.5
4,307,102 + -0.5
4,307,109 + +0.2
4,307,109 + +1.1
4,307,109 + -2.2
4,307,109 + +0.4
4,307,110 - +0.5
4,307,110 - -0.2
4,307,110 - +1.5
4,307,110 - +1.7
4,307,113 + -1.8
4,307,114 - +0.9
4,307,135 - -0.7
4,307,161 + -1.3
4,307,252 + PP_3779 0.20 -1.1
4,307,252 + PP_3779 0.20 -0.1
4,307,253 - PP_3779 0.20 +1.2
4,307,253 - PP_3779 0.20 -2.8
4,307,253 - PP_3779 0.20 -0.2
4,307,256 + PP_3779 0.20 -0.9
4,307,285 - PP_3779 0.23 +3.5
4,307,315 - PP_3779 0.26 +0.8
4,307,317 - PP_3779 0.27 +0.9
4,307,328 + PP_3779 0.28 -0.1
4,307,362 + PP_3779 0.32 -1.5
4,307,363 - PP_3779 0.32 -0.1
4,307,374 + PP_3779 0.33 -1.2
4,307,438 - PP_3779 0.40 +0.2
4,307,460 + PP_3779 0.42 -1.7
4,307,574 - PP_3779 0.54 +1.0
4,307,588 - PP_3779 0.56 -1.7
4,307,637 + PP_3779 0.61 +1.3
4,307,637 + PP_3779 0.61 +1.0
4,307,780 + PP_3779 0.76 +1.0
4,307,780 + PP_3779 0.76 +0.5
4,307,780 + PP_3779 0.76 +0.7
4,307,781 - PP_3779 0.76 +0.3

Or see this region's nucleotide sequence