Strain Fitness in Pseudomonas putida KT2440 around PP_1903
Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. |
|---|---|---|---|---|---|
| remove | |||||
| 2,144,686 | + | -0.5 | |||
| 2,145,887 | + | PP_1903 | 0.52 | -1.0 | |
| 2,146,019 | + | PP_1903 | 0.80 | -0.8 | |
| 2,146,022 | + | PP_1903 | 0.81 | -0.5 | |
| 2,146,022 | + | PP_1903 | 0.81 | +0.5 | |
| 2,146,022 | + | PP_1903 | 0.81 | -0.7 | |
| 2,146,107 | + | -0.1 |
Or see this region's nucleotide sequence