Strain Fitness in Pseudomonas putida KT2440 around PP_0778

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0776 and PP_0777 are separated by 145 nucleotidesPP_0777 and PP_0778 are separated by 63 nucleotidesPP_0778 and PP_0779 are separated by 154 nucleotides PP_0776: PP_0776 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 894,047 to 894,532 _0776 PP_0777: PP_0777 - Glutathione peroxidase, at 894,678 to 895,160 _0777 PP_0778: PP_0778 - Glycosyl transferase, group 1 family protein, at 895,224 to 896,414 _0778 PP_0779: PP_0779 - Methyl-accepting chemotaxis transducer/sensory box protein, at 896,569 to 897,909 _0779 Position (kb) 895 896 897Strain fitness (log2 ratio) -1 0 1 2at 894.248 kb on + strand, within PP_0776at 894.257 kb on + strand, within PP_0776at 894.544 kb on - strandat 894.544 kb on - strandat 894.624 kb on + strandat 894.624 kb on + strandat 894.801 kb on + strand, within PP_0777at 894.823 kb on - strand, within PP_0777at 894.831 kb on + strand, within PP_0777at 894.832 kb on - strand, within PP_0777at 894.832 kb on - strand, within PP_0777at 894.832 kb on - strand, within PP_0777at 894.934 kb on - strand, within PP_0777at 894.934 kb on - strand, within PP_0777at 894.997 kb on - strand, within PP_0777at 894.997 kb on - strand, within PP_0777at 895.040 kb on + strand, within PP_0777at 895.040 kb on + strand, within PP_0777at 895.040 kb on + strand, within PP_0777at 895.041 kb on - strand, within PP_0777at 895.041 kb on - strand, within PP_0777at 895.263 kb on - strandat 895.295 kb on - strandat 895.467 kb on - strand, within PP_0778at 895.467 kb on - strand, within PP_0778at 895.492 kb on + strand, within PP_0778at 895.492 kb on + strand, within PP_0778at 895.493 kb on - strand, within PP_0778at 895.501 kb on - strand, within PP_0778at 895.588 kb on + strand, within PP_0778at 895.588 kb on + strand, within PP_0778at 895.589 kb on - strand, within PP_0778at 895.589 kb on - strand, within PP_0778at 895.711 kb on + strand, within PP_0778at 895.722 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.982 kb on - strand, within PP_0778at 895.982 kb on - strand, within PP_0778at 896.017 kb on + strand, within PP_0778at 896.018 kb on - strand, within PP_0778at 896.018 kb on - strand, within PP_0778at 896.029 kb on + strand, within PP_0778at 896.029 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.391 kb on - strandat 896.393 kb on + strandat 896.393 kb on + strandat 896.393 kb on + strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.397 kb on + strandat 896.397 kb on + strandat 896.398 kb on - strandat 896.408 kb on + strandat 896.409 kb on - strandat 896.409 kb on - strandat 896.445 kb on + strandat 896.466 kb on + strandat 896.466 kb on + strandat 896.467 kb on - strandat 896.467 kb on - strandat 896.467 kb on - strandat 896.508 kb on - strandat 896.508 kb on - strandat 896.508 kb on - strandat 896.536 kb on + strandat 896.566 kb on + strandat 896.567 kb on - strandat 896.567 kb on - strandat 896.667 kb on + strandat 896.667 kb on + strandat 896.668 kb on - strandat 896.827 kb on + strand, within PP_0779at 896.828 kb on - strand, within PP_0779at 896.962 kb on + strand, within PP_0779at 896.962 kb on + strand, within PP_0779at 896.963 kb on - strand, within PP_0779at 896.963 kb on - strand, within PP_0779at 896.963 kb on - strand, within PP_0779at 897.144 kb on + strand, within PP_0779at 897.194 kb on - strand, within PP_0779at 897.229 kb on + strand, within PP_0779at 897.229 kb on + strand, within PP_0779at 897.230 kb on - strand, within PP_0779at 897.230 kb on - strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.293 kb on - strand, within PP_0779at 897.325 kb on + strandat 897.325 kb on + strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strandat 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.406 kb on + strand, within PP_0779

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Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
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894,248 + PP_0776 0.41 +2.4
894,257 + PP_0776 0.43 +2.4
894,544 - -0.3
894,544 - +1.4
894,624 + -0.7
894,624 + -0.4
894,801 + PP_0777 0.25 -0.1
894,823 - PP_0777 0.30 +0.0
894,831 + PP_0777 0.32 +0.6
894,832 - PP_0777 0.32 +0.1
894,832 - PP_0777 0.32 +0.8
894,832 - PP_0777 0.32 -1.3
894,934 - PP_0777 0.53 -0.5
894,934 - PP_0777 0.53 +0.4
894,997 - PP_0777 0.66 +0.8
894,997 - PP_0777 0.66 -0.9
895,040 + PP_0777 0.75 -0.0
895,040 + PP_0777 0.75 -0.0
895,040 + PP_0777 0.75 -0.3
895,041 - PP_0777 0.75 -0.2
895,041 - PP_0777 0.75 +1.5
895,263 - -0.4
895,295 - -0.0
895,467 - PP_0778 0.20 +0.2
895,467 - PP_0778 0.20 +0.4
895,492 + PP_0778 0.23 +0.2
895,492 + PP_0778 0.23 +0.6
895,493 - PP_0778 0.23 -1.0
895,501 - PP_0778 0.23 -0.2
895,588 + PP_0778 0.31 -0.6
895,588 + PP_0778 0.31 +0.3
895,589 - PP_0778 0.31 +0.4
895,589 - PP_0778 0.31 -0.6
895,711 + PP_0778 0.41 -1.1
895,722 + PP_0778 0.42 +1.4
895,981 + PP_0778 0.64 +0.3
895,981 + PP_0778 0.64 -0.7
895,981 + PP_0778 0.64 -0.1
895,982 - PP_0778 0.64 -0.2
895,982 - PP_0778 0.64 +0.2
896,017 + PP_0778 0.67 +0.4
896,018 - PP_0778 0.67 +2.4
896,018 - PP_0778 0.67 -0.0
896,029 + PP_0778 0.68 -0.4
896,029 + PP_0778 0.68 -0.9
896,128 + PP_0778 0.76 -0.2
896,128 + PP_0778 0.76 -0.0
896,128 + PP_0778 0.76 -0.9
896,129 - PP_0778 0.76 -0.5
896,129 - PP_0778 0.76 -0.3
896,129 - PP_0778 0.76 -0.7
896,129 - PP_0778 0.76 -0.7
896,134 - PP_0778 0.76 +0.1
896,134 - PP_0778 0.76 +0.1
896,134 - PP_0778 0.76 +2.4
896,134 - PP_0778 0.76 -0.5
896,391 - -0.9
896,393 + -0.4
896,393 + +0.1
896,393 + +0.8
896,394 - +1.2
896,394 - -0.8
896,394 - +1.4
896,394 - -0.6
896,394 - +0.1
896,394 - +0.0
896,394 - +1.1
896,394 - -0.1
896,397 + +0.1
896,397 + +0.1
896,398 - -0.7
896,408 + +0.1
896,409 - +1.0
896,409 - +0.4
896,445 + +0.4
896,466 + +0.0
896,466 + +1.3
896,467 - +0.1
896,467 - +0.1
896,467 - -1.3
896,508 - +0.9
896,508 - -0.7
896,508 - -0.7
896,536 + -0.4
896,566 + +1.7
896,567 - +2.4
896,567 - -0.3
896,667 + -0.1
896,667 + +0.3
896,668 - -0.2
896,827 + PP_0779 0.19 -0.2
896,828 - PP_0779 0.19 -0.1
896,962 + PP_0779 0.29 -0.4
896,962 + PP_0779 0.29 -0.1
896,963 - PP_0779 0.29 -0.6
896,963 - PP_0779 0.29 -0.8
896,963 - PP_0779 0.29 -0.3
897,144 + PP_0779 0.43 +0.4
897,194 - PP_0779 0.47 -1.0
897,229 + PP_0779 0.49 -0.4
897,229 + PP_0779 0.49 -0.1
897,230 - PP_0779 0.49 +0.1
897,230 - PP_0779 0.49 -0.3
897,231 + PP_0779 0.49 -0.2
897,231 + PP_0779 0.49 +0.6
897,231 + PP_0779 0.49 -0.1
897,232 - PP_0779 0.49 +0.0
897,232 - PP_0779 0.49 +0.7
897,232 - PP_0779 0.49 -0.1
897,232 - PP_0779 0.49 -0.3
897,292 + PP_0779 0.54 +0.2
897,292 + PP_0779 0.54 +0.4
897,292 + PP_0779 0.54 +1.0
897,292 + PP_0779 0.54 -0.5
897,293 - PP_0779 0.54 -0.7
897,325 + -1.1
897,325 + PP_0779 0.56 -1.3
897,326 - PP_0779 0.56 -0.2
897,326 - +0.4
897,326 - PP_0779 0.56 +0.3
897,326 - PP_0779 0.56 +0.5
897,326 - PP_0779 0.56 -0.4
897,326 - PP_0779 0.56 -0.7
897,326 - PP_0779 0.56 -0.5
897,326 - PP_0779 0.56 +0.2
897,406 + PP_0779 0.62 +0.2

Or see this region's nucleotide sequence