Strain Fitness in Pseudomonas putida KT2440 around PP_2793

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
3,181,560	+		PP_2791	0.67	-0.3
3,181,771	-		PP_2791	0.85	+0.5
3,181,861	+				-1.3
3,181,861	+				+0.3
3,181,862	-				+0.5
3,182,318	+				-0.2
3,182,617	-		PP_2793	0.24	+0.2
3,183,009	+		PP_2793	0.57	-0.5
3,183,056	-		PP_2793	0.61	-0.2
3,183,439	+				-0.0
3,183,439	+				-0.1
3,183,820	+		PP_2794	0.40	-1.8
3,183,988	-		PP_2794	0.62	-0.1
3,184,084	-		PP_2794	0.74	+0.6
3,184,278	+				+0.4
3,184,297	-				+0.7
3,184,315	+				+0.3
3,184,319	+				+0.5
3,184,319	+				+0.7
3,184,320	-				+0.1
3,184,320	-				+0.7
3,184,320	-				+0.1
3,184,320	-				-0.1
3,184,320	-				+0.6
3,184,320	-				+1.9
3,184,320	-				+0.4
3,184,320	-				+1.0
3,184,320	-				-1.1
3,184,460	+				-1.9
3,184,484	+				+0.3
3,184,485	-				-1.0