Strain Fitness in Pseudomonas putida KT2440 around PP_1296

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1295 and PP_1296 are separated by 100 nucleotidesPP_1296 and PP_1297 are separated by 332 nucleotides PP_1295: PP_1295 - ATP-dependent RNA helicase RhlB, at 1,480,295 to 1,481,737 _1295 PP_1296: PP_1296 - Carboxylesterase 2, at 1,481,838 to 1,482,494 _1296 PP_1297: PP_1297 - putative amino-acid ABC transporter-binding protein YhdW, at 1,482,827 to 1,483,855 _1297 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -2 -1 0 1 2at 1480.981 kb on + strandat 1480.981 kb on + strand, within PP_1295at 1480.981 kb on + strand, within PP_1295at 1480.982 kb on - strand, within PP_1295at 1480.982 kb on - strand, within PP_1295at 1480.982 kb on - strandat 1481.125 kb on - strand, within PP_1295at 1481.163 kb on + strand, within PP_1295at 1481.163 kb on + strand, within PP_1295at 1481.163 kb on + strand, within PP_1295at 1481.164 kb on - strand, within PP_1295at 1481.164 kb on - strand, within PP_1295at 1481.250 kb on + strand, within PP_1295at 1481.250 kb on + strand, within PP_1295at 1481.250 kb on + strand, within PP_1295at 1481.250 kb on + strand, within PP_1295at 1481.251 kb on - strand, within PP_1295at 1481.251 kb on - strand, within PP_1295at 1481.367 kb on + strand, within PP_1295at 1481.367 kb on + strand, within PP_1295at 1481.367 kb on + strand, within PP_1295at 1481.401 kb on - strand, within PP_1295at 1481.401 kb on - strand, within PP_1295at 1481.715 kb on - strandat 1481.766 kb on + strandat 1481.766 kb on + strandat 1481.767 kb on - strandat 1481.780 kb on + strandat 1481.780 kb on + strandat 1481.780 kb on + strandat 1481.781 kb on - strandat 1481.781 kb on - strandat 1481.781 kb on - strandat 1481.811 kb on + strandat 1481.811 kb on + strandat 1481.812 kb on - strandat 1481.823 kb on + strandat 1481.823 kb on + strandat 1481.824 kb on - strandat 1481.824 kb on - strandat 1481.824 kb on - strandat 1481.840 kb on - strandat 1481.917 kb on + strand, within PP_1296at 1481.950 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.119 kb on + strand, within PP_1296at 1482.119 kb on + strand, within PP_1296at 1482.119 kb on + strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.121 kb on + strand, within PP_1296at 1482.121 kb on + strand, within PP_1296at 1482.122 kb on - strand, within PP_1296at 1482.122 kb on - strand, within PP_1296at 1482.292 kb on + strand, within PP_1296at 1482.293 kb on - strand, within PP_1296at 1482.293 kb on - strand, within PP_1296at 1482.293 kb on - strand, within PP_1296at 1482.310 kb on + strand, within PP_1296at 1482.310 kb on + strand, within PP_1296at 1482.403 kb on - strand, within PP_1296at 1482.403 kb on - strand, within PP_1296at 1482.404 kb on - strand, within PP_1296at 1482.412 kb on + strand, within PP_1296at 1482.523 kb on + strandat 1482.596 kb on - strandat 1482.596 kb on - strandat 1482.650 kb on + strandat 1482.742 kb on - strandat 1482.742 kb on - strandat 1482.742 kb on - strandat 1483.128 kb on + strand, within PP_1297at 1483.199 kb on + strand, within PP_1297at 1483.199 kb on + strand, within PP_1297at 1483.199 kb on + strand, within PP_1297at 1483.200 kb on - strand, within PP_1297at 1483.200 kb on - strand, within PP_1297at 1483.200 kb on - strand, within PP_1297at 1483.200 kb on - strand, within PP_1297at 1483.202 kb on + strand, within PP_1297at 1483.202 kb on + strand, within PP_1297at 1483.203 kb on - strand, within PP_1297at 1483.203 kb on - strand, within PP_1297at 1483.344 kb on - strand, within PP_1297at 1483.344 kb on - strand, within PP_1297at 1483.355 kb on - strand, within PP_1297at 1483.472 kb on + strand, within PP_1297at 1483.473 kb on - strand, within PP_1297at 1483.473 kb on - strand, within PP_1297

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
remove
1,480,981 + +2.6
1,480,981 + PP_1295 0.48 -0.5
1,480,981 + PP_1295 0.48 -0.7
1,480,982 - PP_1295 0.48 +1.3
1,480,982 - PP_1295 0.48 -1.6
1,480,982 - +2.6
1,481,125 - PP_1295 0.58 -0.9
1,481,163 + PP_1295 0.60 -1.3
1,481,163 + PP_1295 0.60 -1.7
1,481,163 + PP_1295 0.60 -1.5
1,481,164 - PP_1295 0.60 +1.3
1,481,164 - PP_1295 0.60 +1.3
1,481,250 + PP_1295 0.66 +0.7
1,481,250 + PP_1295 0.66 -1.2
1,481,250 + PP_1295 0.66 +0.0
1,481,250 + PP_1295 0.66 -0.7
1,481,251 - PP_1295 0.66 -0.2
1,481,251 - PP_1295 0.66 +0.3
1,481,367 + PP_1295 0.74 -0.5
1,481,367 + PP_1295 0.74 +0.2
1,481,367 + PP_1295 0.74 -0.8
1,481,401 - PP_1295 0.77 -0.6
1,481,401 - PP_1295 0.77 -1.1
1,481,715 - -0.4
1,481,766 + -0.2
1,481,766 + -2.2
1,481,767 - +1.2
1,481,780 + -0.7
1,481,780 + -0.9
1,481,780 + +1.6
1,481,781 - -0.9
1,481,781 - +2.6
1,481,781 - +0.3
1,481,811 + -0.9
1,481,811 + -1.4
1,481,812 - +0.3
1,481,823 + +2.3
1,481,823 + -0.7
1,481,824 - -0.1
1,481,824 - +0.9
1,481,824 - -0.0
1,481,840 - +1.3
1,481,917 + PP_1296 0.12 -0.5
1,481,950 + PP_1296 0.17 -0.9
1,482,073 + PP_1296 0.36 -1.1
1,482,073 + PP_1296 0.36 -0.6
1,482,073 + PP_1296 0.36 -0.7
1,482,073 + PP_1296 0.36 -1.0
1,482,073 + PP_1296 0.36 -0.3
1,482,073 + PP_1296 0.36 -1.3
1,482,074 - PP_1296 0.36 +0.1
1,482,074 - PP_1296 0.36 +1.6
1,482,074 - PP_1296 0.36 -0.4
1,482,074 - PP_1296 0.36 +0.5
1,482,074 - PP_1296 0.36 -0.5
1,482,117 + PP_1296 0.42 -1.0
1,482,117 + PP_1296 0.42 -0.0
1,482,117 + PP_1296 0.42 -0.5
1,482,117 + PP_1296 0.42 +2.6
1,482,117 + PP_1296 0.42 -0.2
1,482,118 - PP_1296 0.43 +0.7
1,482,118 - PP_1296 0.43 -0.3
1,482,118 - PP_1296 0.43 +0.3
1,482,118 - PP_1296 0.43 -0.7
1,482,118 - PP_1296 0.43 +0.3
1,482,118 - PP_1296 0.43 -1.2
1,482,119 + PP_1296 0.43 -0.7
1,482,119 + PP_1296 0.43 -0.1
1,482,119 + PP_1296 0.43 -0.8
1,482,120 - PP_1296 0.43 -0.6
1,482,120 - PP_1296 0.43 -0.9
1,482,120 - PP_1296 0.43 -0.2
1,482,120 - PP_1296 0.43 -0.3
1,482,120 - PP_1296 0.43 +1.0
1,482,121 + PP_1296 0.43 -0.9
1,482,121 + PP_1296 0.43 -0.5
1,482,122 - PP_1296 0.43 -1.1
1,482,122 - PP_1296 0.43 +0.7
1,482,292 + PP_1296 0.69 +0.4
1,482,293 - PP_1296 0.69 -0.8
1,482,293 - PP_1296 0.69 -2.7
1,482,293 - PP_1296 0.69 +1.6
1,482,310 + PP_1296 0.72 +1.3
1,482,310 + PP_1296 0.72 +0.3
1,482,403 - PP_1296 0.86 -1.2
1,482,403 - PP_1296 0.86 -0.4
1,482,404 - PP_1296 0.86 -0.6
1,482,412 + PP_1296 0.87 +0.1
1,482,523 + +0.5
1,482,596 - +0.4
1,482,596 - +0.1
1,482,650 + +1.5
1,482,742 - +0.2
1,482,742 - +1.9
1,482,742 - -0.5
1,483,128 + PP_1297 0.29 -0.2
1,483,199 + PP_1297 0.36 -2.5
1,483,199 + PP_1297 0.36 -0.8
1,483,199 + PP_1297 0.36 -1.3
1,483,200 - PP_1297 0.36 +0.1
1,483,200 - PP_1297 0.36 +0.0
1,483,200 - PP_1297 0.36 -1.3
1,483,200 - PP_1297 0.36 +0.6
1,483,202 + PP_1297 0.36 -2.1
1,483,202 + PP_1297 0.36 -1.0
1,483,203 - PP_1297 0.37 -0.2
1,483,203 - PP_1297 0.37 +0.1
1,483,344 - PP_1297 0.50 +0.3
1,483,344 - PP_1297 0.50 -0.1
1,483,355 - PP_1297 0.51 -0.1
1,483,472 + PP_1297 0.63 +0.5
1,483,473 - PP_1297 0.63 +0.3
1,483,473 - PP_1297 0.63 -0.1

Or see this region's nucleotide sequence