Strain Fitness in Pseudomonas putida KT2440 around PP_1244

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,418,744	+		PP_1241	0.60	-0.9
1,418,744	+		PP_1241	0.60	+0.0
1,418,745	-		PP_1241	0.61	+0.7
1,418,894	+				+1.4
1,418,894	+				-1.0
1,418,894	+				-1.4
1,418,955	+				-0.6
1,418,956	-				-0.6
1,418,977	-				+0.0
1,418,989	+				+0.8
1,418,989	+				+0.1
1,418,989	+				-0.7
1,418,989	+				-0.0
1,418,989	+				+0.2
1,418,990	-				-0.1
1,418,990	-				+0.3
1,418,990	-				-0.7
1,418,991	+				+0.2
1,418,991	+				+2.2
1,418,991	+				+0.4
1,418,991	+				+0.3
1,418,992	-				+0.4
1,419,118	-				+3.6
1,419,118	-				-0.7
1,419,127	+				+2.6
1,419,167	+				-0.1
1,419,211	-				-0.5
1,419,300	+		PP_1242	0.22	-0.4
1,419,301	-		PP_1242	0.23	-0.5
1,419,301	-		PP_1242	0.23	+0.3
1,419,366	+		PP_1242	0.47	-0.5
1,419,366	+		PP_1242	0.47	+0.8
1,419,366	+		PP_1242	0.47	-1.3
1,419,459	+		PP_1242	0.81	-0.2
1,419,459	+		PP_1242	0.81	-1.1
1,419,460	-		PP_1242	0.81	+0.2
1,419,460	-		PP_1242	0.81	+0.4
1,419,578	+				+0.4
1,419,579	-				+2.6
1,419,579	-				+0.2
1,419,649	-				+0.1
1,419,674	+				+0.5
1,419,674	+				+0.8
1,419,674	+				+0.9
1,419,675	-				+0.5
1,419,726	-		PP_1244	0.22	-1.6
1,419,824	+		PP_1244	0.48	-0.0
1,419,824	+		PP_1244	0.48	-1.2
1,419,824	+		PP_1244	0.48	-0.2
1,419,824	+		PP_1244	0.48	-1.2
1,419,825	-		PP_1244	0.49	-0.2
1,419,828	+		PP_1244	0.49	-0.2
1,419,828	+		PP_1244	0.49	+0.3
1,419,828	+		PP_1244	0.49	-1.3
1,419,828	+		PP_1244	0.49	-0.7
1,419,828	+		PP_1244	0.49	-1.2
1,419,904	+		PP_1244	0.70	-1.0
1,419,904	+		PP_1244	0.70	-0.1
1,419,905	-		PP_1244	0.70	-1.1
1,419,968	-		PP_1244	0.88	-2.4
1,419,968	-		PP_1244	0.88	-0.2
1,419,968	-		PP_1244	0.88	-1.1
1,419,968	-		PP_1244	0.88	-0.4
1,419,968	-		PP_1244	0.88	-0.1
1,419,968	-		PP_1244	0.88	+0.6
1,419,998	+				-0.7
1,420,027	+				-0.4
1,420,028	-				+0.3
1,420,157	+				+0.2
1,420,157	+				+0.2
1,420,158	-				-1.6
1,420,175	+				+0.1
1,420,190	-				-0.4
1,420,190	-				+0.2
1,420,190	-				-0.5
1,420,199	+				+0.4
1,420,208	+				+0.5
1,420,209	-				+0.5
1,420,209	-				-0.5
1,420,221	+				+0.3
1,420,225	-				+0.7
1,420,285	-				+0.6
1,420,285	-				+0.3
1,420,395	+				+1.1
1,420,395	+				-0.8
1,420,395	+				-0.9
1,420,557	-				+0.3
1,420,598	+				+1.7
1,420,599	-				-2.1
1,420,744	-		PP_1245	0.25	+0.8
1,420,912	-		PP_1245	0.44	-0.6
1,420,912	-		PP_1245	0.44	+0.4
1,420,992	+		PP_1245	0.53	+0.1
1,420,992	+		PP_1245	0.53	+0.2
1,420,993	-		PP_1245	0.53	+0.5
1,420,993	-		PP_1245	0.53	+0.3
1,420,993	-		PP_1245	0.53	-0.6