Strain Fitness in Pseudomonas putida KT2440 around PP_0805

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
924,552	+		PP_0804	0.70	+1.8
924,553	-		PP_0804	0.70	+1.8
924,553	-		PP_0804	0.70	+1.6
924,591	+		PP_0804	0.72	+2.2
924,591	+		PP_0804	0.72	+2.9
924,686	+		PP_0804	0.77	+0.8
924,687	-		PP_0804	0.77	+1.5
924,726	+		PP_0804	0.78	+1.1
924,727	-		PP_0804	0.79	+1.5
924,788	-		PP_0804	0.81	+1.9
925,049	-				+0.8
925,061	+				+1.8
925,061	+				+1.4
925,262	+				+2.8
925,262	+				+2.1
925,262	+				+0.7
925,263	-				+1.0
925,328	+				+2.3
925,328	+				+1.8
925,375	+		PP_0805	0.13	+1.7
925,376	-		PP_0805	0.13	+0.8
925,386	-		PP_0805	0.14	+1.5
925,386	-		PP_0805	0.14	+1.3
925,592	+		PP_0805	0.28	+1.8
925,592	+				+2.5
925,593	-		PP_0805	0.28	+1.6
925,593	-		PP_0805	0.28	+2.4
925,593	-		PP_0805	0.28	+2.8
925,593	-		PP_0805	0.28	+2.0
925,616	+		PP_0805	0.30	+1.7
925,661	+		PP_0805	0.33	+1.3
925,662	-		PP_0805	0.33	+1.5
925,677	-		PP_0805	0.34	+1.8
925,707	+		PP_0805	0.36	+2.3
925,712	+		PP_0805	0.36	+2.5
925,713	-		PP_0805	0.36	+1.6
925,910	+		PP_0805	0.50	+2.9
925,923	-		PP_0805	0.51	+1.7
925,969	+		PP_0805	0.54	+1.4
925,970	-		PP_0805	0.54	+0.5
926,102	+		PP_0805	0.64	-0.3
926,102	+		PP_0805	0.64	+1.8
926,103	-		PP_0805	0.64	+1.8
926,103	-		PP_0805	0.64	+1.9
926,211	-		PP_0805	0.71	+1.5
926,309	+		PP_0805	0.78	+2.5
926,313	-				+1.5
926,351	+		PP_0805	0.81	-0.1
926,352	-		PP_0805	0.81	+2.1
926,352	-		PP_0805	0.81	+0.8
926,352	-		PP_0805	0.81	+2.3
926,530	+				+0.8
926,530	+				+1.8
926,530	+				+1.6
926,530	+				+1.1
926,530	+				+1.7
926,531	-				+1.9
926,531	-				+1.3
926,531	-				+2.1
926,531	-				+2.7
926,531	-				+3.2
926,531	-				+1.8
926,531	-				+0.2
926,531	-				+2.4
926,531	-				+1.6
926,531	-				+1.5
926,532	+				+2.3
926,532	+				+1.4
926,533	-				+1.2
926,533	-				+1.5
926,533	-				+1.1
926,533	-				+1.1
926,627	+				+0.6
926,627	+				+2.1
926,627	+				+1.4
926,636	+				+1.2
926,637	-				-1.0
926,663	-				-0.2
926,679	+				+1.5
926,680	-				+1.1
926,750	+				+2.5
926,750	+				+2.5
926,750	+				+2.8
926,751	-				+2.0
926,757	+				+1.2
926,759	+				+0.5
926,760	-				+2.5
927,289	+				+2.5
927,289	+				+1.9
927,289	+				+2.5
927,289	+				-0.5
927,290	-				+1.8
927,290	-				+1.3
927,290	-				+0.9
927,296	+				+0.8
927,353	+				+2.8
927,353	+				+2.9
927,353	+				+1.1
927,353	+				+1.3
927,353	+				+0.4
927,353	+				+0.5
927,353	+				+0.7
927,354	-				+1.1
927,354	-				+1.0
927,359	+				+1.9
927,359	+				+1.8
927,360	-				+0.8
927,360	-				+1.4
927,360	-				+2.0
927,360	-				+1.5
927,360	-				+0.5
927,392	+				+0.5
927,393	-				+1.7
927,419	+				+1.5
927,434	+				+1.5
927,434	+				+0.4
927,434	+				+2.4
927,435	-				+1.8
927,435	-				+2.5
927,435	-				+1.9
927,548	+				+0.5
927,548	+				+2.5
927,548	+				+4.5
927,549	-				+2.1
927,549	-				+2.0
927,549	-				+1.6
927,616	+				+1.8
927,616	+				+2.4
927,616	+				+1.5
927,617	-				+1.4
927,617	-				+1.5
927,617	-				+1.8
927,617	-				+1.9
927,623	+				+1.9
927,623	+				+0.7
927,624	-				+0.6
927,624	-				+1.9