Strain Fitness in Pseudomonas putida KT2440 around PP_0632

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
737,582	+				+0.2
737,714	+				+1.0
737,714	+				+1.4
737,714	+				+0.6
737,714	+				+1.2
737,715	-				+1.7
737,715	-				-1.0
737,715	-				-0.6
737,757	+		PP_0630	0.14	-2.8
738,572	-				-0.1
738,572	-				-0.0
738,572	-				+1.0
738,572	-				+0.2
738,581	-				+0.5
738,583	-				-0.3
738,583	-				-0.8
738,628	+				+1.3
738,628	+				+0.4
738,628	+				+2.6
738,829	+		PP_0632	0.32	-0.2
738,829	+		PP_0632	0.32	-0.6
739,056	+		PP_0632	0.58	+0.2
739,056	+		PP_0632	0.58	-0.4
739,057	-		PP_0632	0.59	-0.4
739,150	+		PP_0632	0.69	-2.4
739,263	+		PP_0632	0.82	-0.8
739,264	-		PP_0632	0.82	-0.8
739,264	-				-0.2
739,264	-		PP_0632	0.82	-0.9
739,264	-		PP_0632	0.82	-0.5
739,332	-				-2.2
739,332	-				-0.1
739,378	+				+0.1
739,378	+				-0.6
739,379	-				-0.9
739,379	-				+1.2
739,379	-				-0.3
739,379	-				-1.0
739,379	-				+0.5
739,379	-				-0.7
739,407	+				+0.6
739,429	+				-0.0
739,429	+				-0.7
739,430	-				+0.3
739,430	-				-1.9
739,430	-				-0.2
739,452	+				-0.1
739,453	-				-0.4
739,453	-				-1.0
739,789	-		PP_0633	0.31	-0.1
739,908	+		PP_0633	0.41	+0.4
740,119	-				+2.6
740,225	+		PP_0633	0.67	-0.8
740,239	-		PP_0633	0.68	-1.1
740,239	-		PP_0633	0.68	-0.4
740,239	-		PP_0633	0.68	-0.6
740,239	-		PP_0633	0.68	-0.0