Strain Fitness in Pseudomonas putida KT2440 around PP_0581

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0579 and PP_0580 overlap by 16 nucleotidesPP_0580 and PP_0581 are separated by 2 nucleotidesPP_0581 and PP_0582 are separated by 96 nucleotides PP_0579: PP_0579 - conserved protein of unknown function, at 676,407 to 676,805 _0579 PP_0580: PP_0580 - MaoC domain protein, at 676,790 to 677,641 _0580 PP_0581: PP_0581 - 3-oxoacyl-(Acyl-carrier-protein) reductase, at 677,644 to 679,017 _0581 PP_0582: PP_0582 - Thiolase family protein, at 679,114 to 680,391 _0582 Position (kb) 677 678 679 680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.816 kb on + strandat 676.816 kb on + strandat 676.816 kb on + strandat 676.817 kb on - strandat 676.817 kb on - strandat 676.935 kb on + strand, within PP_0580at 676.936 kb on - strand, within PP_0580at 676.936 kb on - strand, within PP_0580at 677.054 kb on - strand, within PP_0580at 677.061 kb on + strand, within PP_0580at 677.061 kb on + strand, within PP_0580at 677.062 kb on - strand, within PP_0580at 677.082 kb on + strand, within PP_0580at 677.363 kb on + strand, within PP_0580at 677.364 kb on - strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.589 kb on + strandat 677.931 kb on - strand, within PP_0581at 677.931 kb on - strand, within PP_0581at 678.017 kb on + strand, within PP_0581at 678.017 kb on + strand, within PP_0581at 678.017 kb on + strand, within PP_0581at 678.018 kb on - strand, within PP_0581at 678.193 kb on + strand, within PP_0581at 678.193 kb on + strandat 678.193 kb on + strand, within PP_0581at 678.194 kb on - strand, within PP_0581at 678.263 kb on - strand, within PP_0581at 678.416 kb on - strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.501 kb on - strand, within PP_0581at 678.501 kb on - strand, within PP_0581at 678.628 kb on + strand, within PP_0581at 678.628 kb on + strand, within PP_0581at 678.628 kb on + strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.656 kb on - strand, within PP_0581at 678.725 kb on - strand, within PP_0581at 678.725 kb on - strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.800 kb on - strand, within PP_0581at 678.800 kb on - strand, within PP_0581at 678.800 kb on - strand, within PP_0581at 678.800 kb on - strand, within PP_0581at 678.800 kb on - strandat 678.984 kb on - strandat 678.984 kb on - strandat 679.074 kb on + strandat 679.074 kb on + strandat 679.074 kb on + strandat 679.074 kb on + strandat 679.074 kb on + strandat 679.075 kb on - strandat 679.075 kb on - strandat 679.183 kb on + strandat 679.183 kb on + strandat 679.184 kb on - strandat 679.366 kb on + strand, within PP_0582at 679.366 kb on + strand, within PP_0582at 679.366 kb on + strand, within PP_0582at 679.367 kb on - strandat 679.452 kb on + strand, within PP_0582at 679.515 kb on + strand, within PP_0582at 679.515 kb on + strand, within PP_0582at 679.515 kb on + strand, within PP_0582at 679.515 kb on + strand, within PP_0582at 679.516 kb on - strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.614 kb on + strand, within PP_0582at 679.714 kb on - strand, within PP_0582at 679.714 kb on - strand, within PP_0582at 679.739 kb on - strand, within PP_0582at 679.884 kb on + strand, within PP_0582at 679.885 kb on - strand, within PP_0582at 679.972 kb on + strand, within PP_0582at 679.973 kb on - strand, within PP_0582

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Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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676,724 + PP_0579 0.79 +2.6
676,724 + PP_0579 0.79 -1.3
676,724 + PP_0579 0.79 -0.5
676,724 + PP_0579 0.79 +0.1
676,734 + PP_0579 0.82 +0.0
676,734 + PP_0579 0.82 -0.1
676,734 + PP_0579 0.82 -0.1
676,734 + PP_0579 0.82 -1.0
676,734 + PP_0579 0.82 +0.6
676,735 - PP_0579 0.82 +0.2
676,735 - PP_0579 0.82 +0.6
676,735 - PP_0579 0.82 -1.1
676,816 + -0.1
676,816 + -0.7
676,816 + +0.8
676,817 - -0.1
676,817 - +2.6
676,935 + PP_0580 0.17 -1.0
676,936 - PP_0580 0.17 +0.1
676,936 - PP_0580 0.17 +1.6
677,054 - PP_0580 0.31 -0.9
677,061 + PP_0580 0.32 +0.3
677,061 + PP_0580 0.32 -0.1
677,062 - PP_0580 0.32 +0.6
677,082 + PP_0580 0.34 +0.1
677,363 + PP_0580 0.67 -0.1
677,364 - PP_0580 0.67 -1.2
677,442 + PP_0580 0.77 +0.3
677,442 + PP_0580 0.77 -0.4
677,442 + PP_0580 0.77 -1.1
677,442 + PP_0580 0.77 -1.2
677,443 - PP_0580 0.77 -0.0
677,443 - PP_0580 0.77 -0.3
677,443 - PP_0580 0.77 -0.5
677,443 - PP_0580 0.77 -0.9
677,443 - PP_0580 0.77 +0.3
677,589 + +0.1
677,931 - PP_0581 0.21 -1.7
677,931 - PP_0581 0.21 +0.6
678,017 + PP_0581 0.27 -3.1
678,017 + PP_0581 0.27 +0.5
678,017 + PP_0581 0.27 -2.7
678,018 - PP_0581 0.27 -0.5
678,193 + PP_0581 0.40 -1.5
678,193 + +1.6
678,193 + PP_0581 0.40 -0.6
678,194 - PP_0581 0.40 -0.5
678,263 - PP_0581 0.45 -0.0
678,416 - PP_0581 0.56 -0.9
678,500 + PP_0581 0.62 -2.3
678,500 + PP_0581 0.62 -1.2
678,500 + PP_0581 0.62 +1.7
678,500 + PP_0581 0.62 +0.3
678,500 + PP_0581 0.62 -0.4
678,501 - PP_0581 0.62 -0.3
678,501 - PP_0581 0.62 -0.0
678,628 + PP_0581 0.72 +0.4
678,628 + PP_0581 0.72 -0.1
678,628 + PP_0581 0.72 -0.5
678,629 - PP_0581 0.72 -1.1
678,629 - PP_0581 0.72 -0.7
678,629 - PP_0581 0.72 +1.1
678,629 - PP_0581 0.72 +1.2
678,629 - PP_0581 0.72 -1.0
678,629 - PP_0581 0.72 -1.5
678,656 - PP_0581 0.74 -1.0
678,725 - PP_0581 0.79 -1.2
678,725 - PP_0581 0.79 -0.0
678,797 + PP_0581 0.84 +0.8
678,797 + PP_0581 0.84 -2.0
678,797 + PP_0581 0.84 -2.3
678,797 + PP_0581 0.84 -0.8
678,797 + PP_0581 0.84 -1.2
678,798 - PP_0581 0.84 -0.5
678,798 - PP_0581 0.84 +0.7
678,798 - PP_0581 0.84 -1.3
678,798 - PP_0581 0.84 -0.3
678,798 - PP_0581 0.84 -1.2
678,798 - PP_0581 0.84 -0.9
678,798 - PP_0581 0.84 +0.7
678,799 + PP_0581 0.84 +0.4
678,799 + PP_0581 0.84 +0.4
678,799 + PP_0581 0.84 +2.6
678,799 + PP_0581 0.84 -0.4
678,799 + PP_0581 0.84 -0.6
678,799 + PP_0581 0.84 +2.6
678,800 - PP_0581 0.84 +0.3
678,800 - PP_0581 0.84 +0.3
678,800 - PP_0581 0.84 -0.4
678,800 - PP_0581 0.84 -0.0
678,800 - +2.6
678,984 - -1.4
678,984 - +1.1
679,074 + -1.1
679,074 + -1.5
679,074 + +1.4
679,074 + +1.2
679,074 + -0.1
679,075 - -1.0
679,075 - -1.6
679,183 + +0.8
679,183 + -0.4
679,184 - +0.8
679,366 + PP_0582 0.20 +0.1
679,366 + PP_0582 0.20 +0.8
679,366 + PP_0582 0.20 +0.3
679,367 - +2.6
679,452 + PP_0582 0.26 -0.3
679,515 + PP_0582 0.31 -0.8
679,515 + PP_0582 0.31 -1.5
679,515 + PP_0582 0.31 -0.3
679,515 + PP_0582 0.31 +1.0
679,516 - PP_0582 0.31 +0.3
679,517 + PP_0582 0.32 -1.1
679,517 + PP_0582 0.32 +0.2
679,517 + PP_0582 0.32 +0.9
679,517 + PP_0582 0.32 -0.9
679,517 + PP_0582 0.32 +1.0
679,517 + PP_0582 0.32 +1.6
679,517 + PP_0582 0.32 +0.4
679,517 + PP_0582 0.32 +2.6
679,517 + PP_0582 0.32 -0.5
679,517 + PP_0582 0.32 +0.8
679,518 - PP_0582 0.32 +0.1
679,518 - PP_0582 0.32 +0.5
679,518 - PP_0582 0.32 +0.3
679,518 - PP_0582 0.32 +0.1
679,518 - PP_0582 0.32 +1.0
679,518 - PP_0582 0.32 -0.7
679,518 - PP_0582 0.32 +0.0
679,518 - PP_0582 0.32 +1.0
679,518 - PP_0582 0.32 -1.1
679,518 - PP_0582 0.32 +0.4
679,518 - PP_0582 0.32 +0.5
679,614 + PP_0582 0.39 -1.0
679,714 - PP_0582 0.47 -0.7
679,714 - PP_0582 0.47 +0.3
679,739 - PP_0582 0.49 +0.6
679,884 + PP_0582 0.60 -0.4
679,885 - PP_0582 0.60 +3.6
679,972 + PP_0582 0.67 -0.4
679,973 - PP_0582 0.67 +0.7

Or see this region's nucleotide sequence