Strain Fitness in Pseudomonas putida KT2440 around PP_0092

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0089 and PP_0090 are separated by 12 nucleotidesPP_0090 and PP_0091 are separated by 35 nucleotidesPP_0091 and PP_0092 are separated by 55 nucleotidesPP_0092 and PP_0093 are separated by 85 nucleotides PP_0089: PP_0089 - stress-induced peroxiredoxin, lipoyl-dependent peroxidase, at 96,837 to 97,262 _0089 PP_0090: PP_0090 - conserved exported protein of unknown function, at 97,275 to 97,571 _0090 PP_0091: PP_0091 - putative lipoprotein, at 97,607 to 98,020 _0091 PP_0092: PP_0092 - putative lipoprotein, at 98,076 to 98,489 _0092 PP_0093: PP_0093 - putative zinc protease protein, at 98,575 to 99,651 _0093 Position (kb) 98 99Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.290 kb on - strandat 97.294 kb on + strandat 97.294 kb on + strandat 97.294 kb on + strandat 97.295 kb on - strandat 97.348 kb on + strand, within PP_0090at 97.348 kb on + strand, within PP_0090at 97.348 kb on + strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.352 kb on + strand, within PP_0090at 97.353 kb on - strand, within PP_0090at 97.551 kb on + strandat 97.551 kb on + strandat 97.552 kb on - strandat 97.552 kb on - strandat 97.626 kb on + strandat 97.630 kb on + strandat 97.631 kb on - strandat 97.665 kb on + strand, within PP_0091at 97.665 kb on + strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.797 kb on + strand, within PP_0091at 97.807 kb on - strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.988 kb on - strandat 97.988 kb on - strandat 97.988 kb on - strandat 98.049 kb on + strandat 98.049 kb on + strandat 98.058 kb on + strandat 98.058 kb on + strandat 98.059 kb on - strandat 98.142 kb on + strandat 98.261 kb on + strand, within PP_0092at 98.287 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.382 kb on - strand, within PP_0092at 98.479 kb on - strandat 98.479 kb on - strandat 98.513 kb on + strandat 98.514 kb on - strandat 98.514 kb on - strandat 98.574 kb on + strandat 98.671 kb on + strandat 98.672 kb on - strandat 98.672 kb on - strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.675 kb on - strandat 98.675 kb on - strandat 98.675 kb on - strandat 98.726 kb on + strand, within PP_0093at 98.726 kb on + strand, within PP_0093at 98.727 kb on - strand, within PP_0093at 98.752 kb on - strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.852 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.956 kb on + strand, within PP_0093at 98.966 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 99.028 kb on + strand, within PP_0093at 99.028 kb on + strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.050 kb on - strand, within PP_0093at 99.050 kb on - strand, within PP_0093at 99.120 kb on + strand, within PP_0093at 99.121 kb on - strand, within PP_0093at 99.121 kb on - strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.406 kb on + strand, within PP_0093at 99.448 kb on + strand, within PP_0093at 99.449 kb on - strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.464 kb on + strand, within PP_0093at 99.464 kb on - strand, within PP_0093at 99.464 kb on - strand, within PP_0093at 99.478 kb on - strand, within PP_0093

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
remove
97,147 + PP_0089 0.73 -1.7
97,147 + PP_0089 0.73 -2.2
97,147 + PP_0089 0.73 -1.2
97,147 + PP_0089 0.73 +0.8
97,290 - -1.2
97,294 + +0.9
97,294 + +0.2
97,294 + -1.3
97,295 - -0.2
97,348 + PP_0090 0.25 +0.2
97,348 + PP_0090 0.25 -2.1
97,348 + PP_0090 0.25 +0.3
97,349 - PP_0090 0.25 +1.1
97,349 - PP_0090 0.25 +0.2
97,349 - PP_0090 0.25 +0.9
97,349 - PP_0090 0.25 +0.2
97,352 + PP_0090 0.26 -1.1
97,353 - PP_0090 0.26 -0.7
97,551 + -0.3
97,551 + +0.7
97,552 - +0.5
97,552 - -0.9
97,626 + +0.1
97,630 + -1.6
97,631 - -0.4
97,665 + PP_0091 0.14 -0.5
97,665 + PP_0091 0.14 +0.5
97,666 - PP_0091 0.14 -0.3
97,666 - PP_0091 0.14 -0.8
97,666 - PP_0091 0.14 -0.4
97,667 + PP_0091 0.14 -0.2
97,667 + PP_0091 0.14 -0.1
97,667 + PP_0091 0.14 +0.8
97,667 + PP_0091 0.14 +0.2
97,667 + PP_0091 0.14 -0.1
97,668 - PP_0091 0.15 +0.2
97,668 - PP_0091 0.15 -0.7
97,668 - PP_0091 0.15 -1.1
97,668 - PP_0091 0.15 +0.9
97,668 - PP_0091 0.15 +0.1
97,668 - PP_0091 0.15 +0.1
97,668 - PP_0091 0.15 -0.1
97,668 - PP_0091 0.15 -0.6
97,797 + PP_0091 0.46 -0.5
97,807 - PP_0091 0.48 +0.7
97,923 + PP_0091 0.76 +0.5
97,923 + PP_0091 0.76 -1.1
97,924 - PP_0091 0.77 +0.5
97,924 - PP_0091 0.77 +0.2
97,987 + -0.1
97,987 + +1.2
97,987 + -0.0
97,987 + +0.3
97,988 - +0.6
97,988 - +0.0
97,988 - -0.1
98,049 + +2.5
98,049 + -0.6
98,058 + +0.6
98,058 + -0.9
98,059 - +1.1
98,142 + +2.5
98,261 + PP_0092 0.45 -1.1
98,287 + PP_0092 0.51 -2.7
98,381 + PP_0092 0.74 -1.0
98,381 + PP_0092 0.74 -1.1
98,381 + PP_0092 0.74 +0.0
98,382 - PP_0092 0.74 +0.2
98,479 - -1.5
98,479 - -0.1
98,513 + -0.7
98,514 - +0.9
98,514 - -0.3
98,574 + -0.2
98,671 + +0.1
98,672 - -0.5
98,672 - -0.5
98,674 + -1.0
98,674 + +0.2
98,674 + +1.2
98,674 + -0.6
98,675 - -0.5
98,675 - -0.4
98,675 - -0.9
98,726 + PP_0093 0.14 -1.3
98,726 + PP_0093 0.14 -0.3
98,727 - PP_0093 0.14 -0.7
98,752 - PP_0093 0.16 -1.5
98,851 + PP_0093 0.26 -0.6
98,851 + PP_0093 0.26 +3.5
98,852 - PP_0093 0.26 +0.3
98,873 - PP_0093 0.28 -0.1
98,873 - PP_0093 0.28 -1.1
98,956 + PP_0093 0.35 +2.2
98,966 - PP_0093 0.36 +1.7
98,969 - PP_0093 0.37 +0.4
98,969 - PP_0093 0.37 -0.7
98,969 - PP_0093 0.37 -0.1
99,028 + PP_0093 0.42 -2.7
99,028 + PP_0093 0.42 +0.0
99,029 - PP_0093 0.42 -0.7
99,029 - PP_0093 0.42 -0.2
99,029 - PP_0093 0.42 +0.2
99,029 - PP_0093 0.42 +1.3
99,049 + PP_0093 0.44 -2.1
99,049 + PP_0093 0.44 -1.8
99,049 + PP_0093 0.44 +0.1
99,050 - PP_0093 0.44 -0.7
99,050 - PP_0093 0.44 -3.4
99,120 + PP_0093 0.51 +0.3
99,121 - PP_0093 0.51 -0.1
99,121 - PP_0093 0.51 +0.5
99,157 + PP_0093 0.54 +0.5
99,157 + PP_0093 0.54 -0.1
99,157 + PP_0093 0.54 -0.5
99,157 + PP_0093 0.54 +0.7
99,157 + PP_0093 0.54 +0.5
99,157 + PP_0093 0.54 -0.3
99,157 + PP_0093 0.54 -1.3
99,157 + PP_0093 0.54 +0.7
99,158 - PP_0093 0.54 -1.3
99,158 - PP_0093 0.54 -0.3
99,158 - PP_0093 0.54 +0.8
99,158 - PP_0093 0.54 -0.3
99,158 - PP_0093 0.54 +1.4
99,158 - PP_0093 0.54 +0.3
99,334 + PP_0093 0.70 +0.6
99,334 + PP_0093 0.70 -0.8
99,334 + PP_0093 0.70 +0.2
99,335 - PP_0093 0.71 +0.3
99,335 - PP_0093 0.71 +0.9
99,335 - PP_0093 0.71 -0.2
99,406 + PP_0093 0.77 -0.2
99,448 + PP_0093 0.81 +2.2
99,449 - PP_0093 0.81 -0.7
99,463 + PP_0093 0.82 +1.8
99,463 + PP_0093 0.82 +1.9
99,463 + PP_0093 0.82 +0.2
99,463 + PP_0093 0.82 +0.3
99,463 + PP_0093 0.82 -0.6
99,463 + PP_0093 0.82 +0.4
99,463 + PP_0093 0.82 -0.8
99,464 + PP_0093 0.83 +0.6
99,464 - PP_0093 0.83 -0.4
99,464 - PP_0093 0.83 +0.8
99,478 - PP_0093 0.84 -0.6

Or see this region's nucleotide sequence