Experiment: KB with Escin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4669 and Psyr_4670 are separated by 135 nucleotides Psyr_4670 and Psyr_4671 are separated by 88 nucleotides
Psyr_4669: Psyr_4669 - pyrroloquinoline quinone synthesis related protease (pqqF), Metallo peptidase, MEROPS family M16A, at 5,534,830 to 5,537,118
_4669
Psyr_4670: Psyr_4670 - coenzyme PQQ synthesis protein A, at 5,537,254 to 5,537,328
_4670
Psyr_4671: Psyr_4671 - coenzyme PQQ synthesis protein B, at 5,537,417 to 5,538,328
_4671
Position (kb) 5534
5535
5536
5537
5538 Strain fitness (log2 ratio) -1
0
1
2
3 at 5534.740 kb on - strand at 5535.334 kb on + strand, within Psyr_4669 at 5535.335 kb on - strand, within Psyr_4669 at 5535.397 kb on + strand, within Psyr_4669 at 5535.397 kb on + strand, within Psyr_4669 at 5535.398 kb on - strand, within Psyr_4669 at 5535.712 kb on + strand, within Psyr_4669 at 5535.713 kb on - strand, within Psyr_4669 at 5535.844 kb on + strand, within Psyr_4669 at 5535.954 kb on - strand, within Psyr_4669 at 5536.081 kb on + strand, within Psyr_4669 at 5536.081 kb on + strand, within Psyr_4669 at 5536.082 kb on - strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.218 kb on - strand, within Psyr_4669 at 5536.218 kb on - strand, within Psyr_4669 at 5536.218 kb on - strand, within Psyr_4669 at 5536.375 kb on - strand, within Psyr_4669 at 5536.391 kb on + strand, within Psyr_4669 at 5536.392 kb on - strand, within Psyr_4669 at 5536.675 kb on + strand, within Psyr_4669 at 5536.676 kb on - strand, within Psyr_4669 at 5536.838 kb on + strand, within Psyr_4669 at 5536.838 kb on + strand, within Psyr_4669 at 5537.164 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.211 kb on - strand at 5537.211 kb on - strand at 5537.211 kb on - strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.253 kb on + strand at 5537.254 kb on - strand at 5537.254 kb on - strand at 5537.254 kb on - strand at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.312 kb on - strand, within Psyr_4670 at 5537.312 kb on - strand, within Psyr_4670 at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.433 kb on + strand at 5537.433 kb on + strand at 5537.433 kb on + strand at 5537.919 kb on - strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Escin 10 mM remove 5,534,740 - -0.8 5,535,334 + Psyr_4669 0.22 -0.1 5,535,335 - Psyr_4669 0.22 -1.0 5,535,397 + Psyr_4669 0.25 -0.4 5,535,397 + Psyr_4669 0.25 +0.9 5,535,398 - Psyr_4669 0.25 -0.9 5,535,712 + Psyr_4669 0.39 -0.5 5,535,713 - Psyr_4669 0.39 -0.3 5,535,844 + Psyr_4669 0.44 +0.1 5,535,954 - Psyr_4669 0.49 +1.5 5,536,081 + Psyr_4669 0.55 +0.9 5,536,081 + Psyr_4669 0.55 -1.0 5,536,082 - Psyr_4669 0.55 -0.6 5,536,217 + Psyr_4669 0.61 +0.2 5,536,217 + Psyr_4669 0.61 +0.5 5,536,217 + Psyr_4669 0.61 -0.4 5,536,217 + Psyr_4669 0.61 +0.2 5,536,218 - Psyr_4669 0.61 +0.9 5,536,218 - Psyr_4669 0.61 +0.9 5,536,218 - Psyr_4669 0.61 +0.6 5,536,375 - Psyr_4669 0.67 +0.3 5,536,391 + Psyr_4669 0.68 -0.7 5,536,392 - Psyr_4669 0.68 -0.2 5,536,675 + Psyr_4669 0.81 -0.1 5,536,676 - Psyr_4669 0.81 -0.3 5,536,838 + Psyr_4669 0.88 +0.7 5,536,838 + Psyr_4669 0.88 +0.7 5,537,164 + -0.8 5,537,169 + -0.7 5,537,169 + -0.1 5,537,169 + +2.0 5,537,169 + -0.2 5,537,169 + -0.2 5,537,169 + +0.7 5,537,169 + +0.3 5,537,169 + +1.5 5,537,169 + +0.4 5,537,169 + -0.3 5,537,169 + -1.4 5,537,170 - +0.2 5,537,170 - +0.5 5,537,170 - -0.8 5,537,170 - +0.6 5,537,170 - +0.1 5,537,170 - -0.6 5,537,170 - +0.2 5,537,170 - -1.3 5,537,170 - +1.1 5,537,170 - +0.2 5,537,170 - -0.1 5,537,191 + -0.2 5,537,191 + -0.8 5,537,191 + +0.7 5,537,191 + -0.0 5,537,191 + -1.0 5,537,191 + +0.4 5,537,191 + +0.3 5,537,191 + -0.4 5,537,191 + +1.7 5,537,191 + +0.3 5,537,192 - +0.9 5,537,192 - +0.1 5,537,192 - -1.6 5,537,192 - +0.8 5,537,192 - -0.2 5,537,192 - +0.3 5,537,192 - +0.3 5,537,192 - +0.5 5,537,210 + +1.5 5,537,210 + +0.4 5,537,210 + +0.9 5,537,210 + -0.6 5,537,211 - -0.6 5,537,211 - -0.1 5,537,211 - +0.7 5,537,217 + +0.5 5,537,217 + -0.5 5,537,217 + +0.4 5,537,217 + -0.4 5,537,217 + -0.0 5,537,217 + -0.3 5,537,218 - +0.7 5,537,218 - -1.5 5,537,218 - -0.2 5,537,218 - +1.0 5,537,218 - +0.7 5,537,218 - +0.4 5,537,218 - -0.1 5,537,218 - -0.8 5,537,253 + +0.8 5,537,254 - +1.1 5,537,254 - -0.2 5,537,254 - +0.2 5,537,275 + Psyr_4670 0.28 +0.3 5,537,275 + Psyr_4670 0.28 -0.3 5,537,275 + Psyr_4670 0.28 -0.4 5,537,275 + Psyr_4670 0.28 +1.1 5,537,276 - Psyr_4670 0.29 +0.4 5,537,311 + Psyr_4670 0.76 +0.5 5,537,311 + Psyr_4670 0.76 +3.7 5,537,312 - Psyr_4670 0.77 +0.9 5,537,312 - Psyr_4670 0.77 -0.8 5,537,420 + +0.3 5,537,420 + -1.3 5,537,420 + -0.2 5,537,420 + -0.3 5,537,420 + -0.9 5,537,420 + -0.2 5,537,420 + -1.3 5,537,420 + +0.1 5,537,420 + +0.4 5,537,420 + -0.4 5,537,420 + +0.1 5,537,420 + -0.8 5,537,420 + -0.2 5,537,420 + -0.6 5,537,420 + -0.2 5,537,421 - -0.0 5,537,421 - -0.5 5,537,421 - +1.1 5,537,421 - -0.9 5,537,421 - -0.5 5,537,421 - -0.1 5,537,421 - +0.3 5,537,421 - -0.1 5,537,421 - -0.0 5,537,421 - -0.8 5,537,421 - +1.8 5,537,433 + -0.1 5,537,433 + +0.2 5,537,433 + +0.2 5,537,919 - Psyr_4671 0.55 -0.4 5,538,002 + Psyr_4671 0.64 +0.6 5,538,002 + Psyr_4671 0.64 +0.8 5,538,002 + Psyr_4671 0.64 +0.4 5,538,002 + Psyr_4671 0.64 +0.4 5,538,002 + Psyr_4671 0.64 -0.4 5,538,002 + Psyr_4671 0.64 +0.2 5,538,002 + Psyr_4671 0.64 -0.7 5,538,003 - Psyr_4671 0.64 +0.7 5,538,003 - Psyr_4671 0.64 +0.0 5,538,003 - Psyr_4671 0.64 +0.5 5,538,003 - Psyr_4671 0.64 -0.1 5,538,003 - Psyr_4671 0.64 +0.6 5,538,003 - Psyr_4671 0.64 +0.8
Or see this region's nucleotide sequence