Experiment: KB with Escin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3873 and Psyr_3874 are separated by 343 nucleotides Psyr_3874 and Psyr_3875 are separated by 77 nucleotides Psyr_3875 and Psyr_3876 overlap by 4 nucleotides
Psyr_3873: Psyr_3873 - ATP-dependent DNA ligase:ATP-dependent DNA ligase, at 4,613,364 to 4,615,067
_3873
Psyr_3874: Psyr_3874 - amino acid ABC transporter substrate-binding protein, PAAT family, at 4,615,411 to 4,616,193
_3874
Psyr_3875: Psyr_3875 - amino acid ABC transporter membrane protein 1, PAAT family, at 4,616,271 to 4,616,999
_3875
Psyr_3876: Psyr_3876 - amino acid ABC transporter membrane protein 2, PAAT family, at 4,616,996 to 4,617,706
_3876
Position (kb) 4615
4616
4617 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4614.622 kb on - strand, within Psyr_3873 at 4614.703 kb on - strand, within Psyr_3873 at 4614.738 kb on + strand, within Psyr_3873 at 4614.739 kb on - strand, within Psyr_3873 at 4614.748 kb on - strand, within Psyr_3873 at 4615.205 kb on - strand at 4615.265 kb on + strand at 4615.265 kb on + strand at 4615.265 kb on + strand at 4615.265 kb on + strand at 4615.266 kb on - strand at 4615.266 kb on - strand at 4615.266 kb on - strand at 4615.267 kb on + strand at 4615.268 kb on - strand at 4615.274 kb on + strand at 4615.274 kb on + strand at 4615.274 kb on + strand at 4615.288 kb on + strand at 4615.342 kb on - strand at 4615.342 kb on - strand at 4615.342 kb on - strand at 4615.391 kb on - strand at 4615.391 kb on - strand at 4615.398 kb on + strand at 4615.399 kb on - strand at 4615.483 kb on + strand at 4615.483 kb on + strand at 4615.483 kb on + strand at 4615.483 kb on + strand at 4615.484 kb on - strand at 4615.484 kb on - strand at 4615.484 kb on - strand at 4615.484 kb on - strand at 4615.516 kb on + strand, within Psyr_3874 at 4615.516 kb on + strand, within Psyr_3874 at 4615.516 kb on + strand, within Psyr_3874 at 4615.516 kb on + strand, within Psyr_3874 at 4615.516 kb on + strand, within Psyr_3874 at 4615.517 kb on - strand, within Psyr_3874 at 4615.517 kb on - strand, within Psyr_3874 at 4615.517 kb on - strand, within Psyr_3874 at 4615.677 kb on + strand, within Psyr_3874 at 4615.720 kb on + strand, within Psyr_3874 at 4615.720 kb on + strand, within Psyr_3874 at 4615.720 kb on + strand, within Psyr_3874 at 4615.720 kb on + strand, within Psyr_3874 at 4615.720 kb on + strand, within Psyr_3874 at 4615.720 kb on + strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.721 kb on - strand, within Psyr_3874 at 4615.822 kb on + strand, within Psyr_3874 at 4615.850 kb on - strand, within Psyr_3874 at 4615.850 kb on - strand, within Psyr_3874 at 4616.009 kb on - strand, within Psyr_3874 at 4616.137 kb on + strand at 4616.137 kb on + strand at 4616.137 kb on + strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.191 kb on + strand at 4616.191 kb on + strand at 4616.191 kb on + strand at 4616.191 kb on + strand at 4616.192 kb on - strand at 4616.192 kb on - strand at 4616.267 kb on - strand at 4616.466 kb on + strand, within Psyr_3875 at 4616.466 kb on + strand, within Psyr_3875 at 4616.467 kb on - strand, within Psyr_3875 at 4616.467 kb on - strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.623 kb on - strand, within Psyr_3875 at 4616.623 kb on - strand, within Psyr_3875 at 4616.631 kb on + strand, within Psyr_3875 at 4616.631 kb on + strand, within Psyr_3875 at 4616.632 kb on - strand, within Psyr_3875 at 4616.874 kb on + strand, within Psyr_3875 at 4616.875 kb on - strand, within Psyr_3875 at 4616.875 kb on - strand, within Psyr_3875 at 4616.886 kb on + strand, within Psyr_3875 at 4616.887 kb on - strand, within Psyr_3875 at 4616.913 kb on + strand, within Psyr_3875 at 4616.913 kb on + strand, within Psyr_3875 at 4616.914 kb on - strand, within Psyr_3875 at 4616.967 kb on + strand at 4616.967 kb on + strand at 4616.968 kb on - strand at 4616.968 kb on - strand at 4617.036 kb on - strand at 4617.036 kb on - strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.038 kb on - strand at 4617.038 kb on - strand at 4617.038 kb on - strand at 4617.179 kb on + strand, within Psyr_3876 at 4617.179 kb on + strand, within Psyr_3876 at 4617.179 kb on + strand, within Psyr_3876 at 4617.179 kb on + strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.186 kb on - strand, within Psyr_3876
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Escin 10 mM remove 4,614,622 - Psyr_3873 0.74 -1.0 4,614,703 - Psyr_3873 0.79 -0.3 4,614,738 + Psyr_3873 0.81 +0.4 4,614,739 - Psyr_3873 0.81 -0.3 4,614,748 - Psyr_3873 0.81 +0.2 4,615,205 - +0.5 4,615,265 + -1.0 4,615,265 + -0.5 4,615,265 + +0.4 4,615,265 + -0.4 4,615,266 - +0.0 4,615,266 - -0.3 4,615,266 - -1.0 4,615,267 + +0.5 4,615,268 - -0.2 4,615,274 + -0.9 4,615,274 + -1.1 4,615,274 + +1.1 4,615,288 + -0.4 4,615,342 - +0.3 4,615,342 - +1.4 4,615,342 - +0.2 4,615,391 - +0.1 4,615,391 - -0.4 4,615,398 + +0.0 4,615,399 - -0.6 4,615,483 + -1.1 4,615,483 + +0.1 4,615,483 + +0.6 4,615,483 + -0.4 4,615,484 - +0.4 4,615,484 - +0.3 4,615,484 - +0.3 4,615,484 - +0.7 4,615,516 + Psyr_3874 0.13 +0.1 4,615,516 + Psyr_3874 0.13 -0.5 4,615,516 + Psyr_3874 0.13 -1.0 4,615,516 + Psyr_3874 0.13 -1.6 4,615,516 + Psyr_3874 0.13 +2.4 4,615,517 - Psyr_3874 0.14 +0.4 4,615,517 - Psyr_3874 0.14 -0.3 4,615,517 - Psyr_3874 0.14 +0.1 4,615,677 + Psyr_3874 0.34 -1.2 4,615,720 + Psyr_3874 0.39 -1.6 4,615,720 + Psyr_3874 0.39 -0.2 4,615,720 + Psyr_3874 0.39 -0.6 4,615,720 + Psyr_3874 0.39 +1.9 4,615,720 + Psyr_3874 0.39 -0.2 4,615,720 + Psyr_3874 0.39 -0.3 4,615,721 - Psyr_3874 0.40 +0.3 4,615,721 - Psyr_3874 0.40 -0.3 4,615,721 - Psyr_3874 0.40 -0.2 4,615,721 - Psyr_3874 0.40 -0.6 4,615,721 - Psyr_3874 0.40 +0.5 4,615,721 - Psyr_3874 0.40 -0.1 4,615,721 - Psyr_3874 0.40 -0.3 4,615,721 - Psyr_3874 0.40 +0.4 4,615,721 - Psyr_3874 0.40 -0.1 4,615,721 - Psyr_3874 0.40 +0.9 4,615,822 + Psyr_3874 0.52 -0.3 4,615,850 - Psyr_3874 0.56 +0.6 4,615,850 - Psyr_3874 0.56 -0.3 4,616,009 - Psyr_3874 0.76 -0.4 4,616,137 + -0.7 4,616,137 + +0.2 4,616,137 + +0.4 4,616,138 - +0.1 4,616,138 - -1.4 4,616,138 - -0.4 4,616,138 - +0.4 4,616,138 - +0.7 4,616,191 + -0.3 4,616,191 + -1.1 4,616,191 + +1.0 4,616,191 + -2.2 4,616,192 - -0.2 4,616,192 - -1.6 4,616,267 - -0.6 4,616,466 + Psyr_3875 0.27 -2.7 4,616,466 + Psyr_3875 0.27 -2.0 4,616,467 - Psyr_3875 0.27 -0.1 4,616,467 - Psyr_3875 0.27 +1.6 4,616,571 + Psyr_3875 0.41 -0.6 4,616,571 + Psyr_3875 0.41 +0.3 4,616,571 + Psyr_3875 0.41 -0.9 4,616,571 + Psyr_3875 0.41 +0.3 4,616,572 - Psyr_3875 0.41 +0.7 4,616,572 - Psyr_3875 0.41 +0.4 4,616,572 - Psyr_3875 0.41 +0.3 4,616,572 - Psyr_3875 0.41 +1.4 4,616,622 + Psyr_3875 0.48 -1.4 4,616,622 + Psyr_3875 0.48 -1.6 4,616,622 + Psyr_3875 0.48 -0.6 4,616,622 + Psyr_3875 0.48 +1.1 4,616,623 - Psyr_3875 0.48 +0.3 4,616,623 - Psyr_3875 0.48 -0.4 4,616,631 + Psyr_3875 0.49 +1.0 4,616,631 + Psyr_3875 0.49 -0.9 4,616,632 - Psyr_3875 0.50 +0.8 4,616,874 + Psyr_3875 0.83 -1.2 4,616,875 - Psyr_3875 0.83 +0.1 4,616,875 - Psyr_3875 0.83 -0.2 4,616,886 + Psyr_3875 0.84 -0.9 4,616,887 - Psyr_3875 0.84 +0.7 4,616,913 + Psyr_3875 0.88 +0.0 4,616,913 + Psyr_3875 0.88 +0.1 4,616,914 - Psyr_3875 0.88 +1.4 4,616,967 + +0.8 4,616,967 + +1.0 4,616,968 - -0.2 4,616,968 - -0.7 4,617,036 - -1.8 4,617,036 - +1.4 4,617,037 + +0.1 4,617,037 + -0.9 4,617,037 + -1.0 4,617,037 + -1.7 4,617,037 + -0.9 4,617,037 + -0.6 4,617,037 + -1.4 4,617,037 + -0.0 4,617,038 - -0.3 4,617,038 - -0.6 4,617,038 - +0.6 4,617,179 + Psyr_3876 0.26 +1.0 4,617,179 + Psyr_3876 0.26 +0.0 4,617,179 + Psyr_3876 0.26 -0.4 4,617,179 + Psyr_3876 0.26 -0.6 4,617,180 - Psyr_3876 0.26 +0.4 4,617,180 - Psyr_3876 0.26 +0.0 4,617,180 - Psyr_3876 0.26 +0.6 4,617,180 - Psyr_3876 0.26 -0.5 4,617,180 - Psyr_3876 0.26 +0.7 4,617,180 - Psyr_3876 0.26 -0.9 4,617,185 + Psyr_3876 0.27 +1.2 4,617,185 + Psyr_3876 0.27 -0.4 4,617,185 + Psyr_3876 0.27 -0.6 4,617,185 + Psyr_3876 0.27 +0.1 4,617,185 + Psyr_3876 0.27 -1.4 4,617,186 - Psyr_3876 0.27 -0.3
Or see this region's nucleotide sequence