Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1524

Experiment: KB with Escin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1522 and Psyr_1523 are separated by 1 nucleotidesPsyr_1523 and Psyr_1524 overlap by 4 nucleotidesPsyr_1524 and Psyr_1525 are separated by 471 nucleotides Psyr_1522: Psyr_1522 - Single-strand binding protein, at 1,712,925 to 1,713,389 _1522 Psyr_1523: Psyr_1523 - hypothetical protein, at 1,713,391 to 1,713,975 _1523 Psyr_1524: Psyr_1524 - conserved hypothetical protein, at 1,713,972 to 1,714,751 _1524 Psyr_1525: Psyr_1525 - conserved hypothetical protein, at 1,715,223 to 1,716,596 _1525 Position (kb) 1713 1714 1715Strain fitness (log2 ratio) -2 -1 0 1 2at 1712.988 kb on - strand, within Psyr_1522at 1713.016 kb on + strand, within Psyr_1522at 1713.016 kb on + strand, within Psyr_1522at 1713.016 kb on + strand, within Psyr_1522at 1713.016 kb on + strand, within Psyr_1522at 1713.016 kb on + strand, within Psyr_1522at 1713.016 kb on + strand, within Psyr_1522at 1713.017 kb on - strand, within Psyr_1522at 1713.017 kb on - strand, within Psyr_1522at 1713.017 kb on - strand, within Psyr_1522at 1713.017 kb on - strand, within Psyr_1522at 1713.126 kb on - strand, within Psyr_1522at 1713.185 kb on - strand, within Psyr_1522at 1713.185 kb on - strand, within Psyr_1522at 1713.208 kb on + strand, within Psyr_1522at 1713.213 kb on + strand, within Psyr_1522at 1713.213 kb on + strand, within Psyr_1522at 1713.213 kb on + strand, within Psyr_1522at 1713.213 kb on + strand, within Psyr_1522at 1713.214 kb on - strand, within Psyr_1522at 1713.214 kb on - strand, within Psyr_1522at 1713.214 kb on - strand, within Psyr_1522at 1713.283 kb on + strand, within Psyr_1522at 1713.376 kb on - strandat 1713.392 kb on + strandat 1713.392 kb on + strandat 1713.393 kb on - strandat 1713.393 kb on - strandat 1713.459 kb on - strand, within Psyr_1523at 1713.516 kb on + strand, within Psyr_1523at 1713.517 kb on - strand, within Psyr_1523at 1713.529 kb on + strand, within Psyr_1523at 1713.529 kb on + strand, within Psyr_1523at 1713.529 kb on + strand, within Psyr_1523at 1713.530 kb on - strand, within Psyr_1523at 1713.530 kb on - strand, within Psyr_1523at 1713.537 kb on + strand, within Psyr_1523at 1713.715 kb on + strand, within Psyr_1523at 1713.715 kb on + strand, within Psyr_1523at 1713.715 kb on + strand, within Psyr_1523at 1713.716 kb on - strand, within Psyr_1523at 1713.716 kb on - strand, within Psyr_1523at 1713.716 kb on - strand, within Psyr_1523at 1713.716 kb on - strand, within Psyr_1523at 1713.716 kb on - strand, within Psyr_1523at 1713.716 kb on - strand, within Psyr_1523at 1713.725 kb on + strand, within Psyr_1523at 1713.726 kb on - strand, within Psyr_1523at 1713.799 kb on + strand, within Psyr_1523at 1713.799 kb on + strand, within Psyr_1523at 1713.799 kb on + strand, within Psyr_1523at 1713.799 kb on + strand, within Psyr_1523at 1713.800 kb on - strand, within Psyr_1523at 1713.800 kb on - strand, within Psyr_1523at 1713.844 kb on + strand, within Psyr_1523at 1713.856 kb on + strand, within Psyr_1523at 1713.856 kb on + strand, within Psyr_1523at 1714.127 kb on + strand, within Psyr_1524at 1714.156 kb on + strand, within Psyr_1524at 1714.156 kb on + strand, within Psyr_1524at 1714.156 kb on + strand, within Psyr_1524at 1714.156 kb on + strand, within Psyr_1524at 1714.156 kb on + strand, within Psyr_1524at 1714.156 kb on + strand, within Psyr_1524at 1714.156 kb on + strand, within Psyr_1524at 1714.156 kb on + strand, within Psyr_1524at 1714.157 kb on - strand, within Psyr_1524at 1714.157 kb on - strand, within Psyr_1524at 1714.157 kb on - strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.307 kb on + strand, within Psyr_1524at 1714.307 kb on + strand, within Psyr_1524at 1714.432 kb on - strand, within Psyr_1524at 1714.443 kb on + strand, within Psyr_1524at 1714.443 kb on + strand, within Psyr_1524at 1714.443 kb on + strand, within Psyr_1524at 1714.444 kb on - strand, within Psyr_1524at 1714.444 kb on - strand, within Psyr_1524at 1714.444 kb on - strand, within Psyr_1524at 1714.472 kb on + strand, within Psyr_1524at 1714.472 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.538 kb on + strand, within Psyr_1524at 1714.538 kb on + strand, within Psyr_1524at 1714.539 kb on - strand, within Psyr_1524at 1714.767 kb on + strandat 1714.767 kb on + strandat 1714.769 kb on + strandat 1714.769 kb on + strandat 1714.770 kb on - strandat 1714.784 kb on - strandat 1714.809 kb on + strandat 1714.809 kb on + strandat 1714.809 kb on + strandat 1714.809 kb on + strandat 1714.810 kb on - strandat 1714.811 kb on + strandat 1714.811 kb on + strandat 1714.812 kb on - strandat 1714.825 kb on + strandat 1714.870 kb on + strandat 1715.248 kb on - strandat 1715.420 kb on + strand, within Psyr_1525at 1715.511 kb on - strand, within Psyr_1525at 1715.607 kb on - strand, within Psyr_1525at 1715.629 kb on - strand, within Psyr_1525at 1715.662 kb on - strand, within Psyr_1525at 1715.672 kb on + strand, within Psyr_1525at 1715.673 kb on - strand, within Psyr_1525at 1715.673 kb on - strand, within Psyr_1525at 1715.673 kb on - strand, within Psyr_1525at 1715.676 kb on + strand, within Psyr_1525at 1715.676 kb on + strand, within Psyr_1525at 1715.684 kb on + strand, within Psyr_1525at 1715.684 kb on + strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.690 kb on + strand, within Psyr_1525at 1715.691 kb on - strand, within Psyr_1525at 1715.696 kb on + strand, within Psyr_1525at 1715.698 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.703 kb on - strand, within Psyr_1525at 1715.703 kb on - strand, within Psyr_1525at 1715.703 kb on - strand, within Psyr_1525at 1715.703 kb on - strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.748 kb on + strand, within Psyr_1525at 1715.749 kb on - strand, within Psyr_1525

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Escin 10 mM
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1,712,988 - Psyr_1522 0.14 +0.0
1,713,016 + Psyr_1522 0.20 +1.7
1,713,016 + Psyr_1522 0.20 +0.0
1,713,016 + Psyr_1522 0.20 -0.6
1,713,016 + Psyr_1522 0.20 -2.1
1,713,016 + Psyr_1522 0.20 -0.1
1,713,016 + Psyr_1522 0.20 +0.9
1,713,017 - Psyr_1522 0.20 -2.3
1,713,017 - Psyr_1522 0.20 -1.0
1,713,017 - Psyr_1522 0.20 -2.4
1,713,017 - Psyr_1522 0.20 +0.3
1,713,126 - Psyr_1522 0.43 -0.3
1,713,185 - Psyr_1522 0.56 +1.0
1,713,185 - Psyr_1522 0.56 +1.8
1,713,208 + Psyr_1522 0.61 -1.1
1,713,213 + Psyr_1522 0.62 -2.4
1,713,213 + Psyr_1522 0.62 -0.6
1,713,213 + Psyr_1522 0.62 -0.5
1,713,213 + Psyr_1522 0.62 -0.6
1,713,214 - Psyr_1522 0.62 -2.5
1,713,214 - Psyr_1522 0.62 +0.3
1,713,214 - Psyr_1522 0.62 +0.6
1,713,283 + Psyr_1522 0.77 -1.4
1,713,376 - +0.6
1,713,392 + -0.6
1,713,392 + -1.0
1,713,393 - +1.4
1,713,393 - +0.2
1,713,459 - Psyr_1523 0.12 -0.7
1,713,516 + Psyr_1523 0.21 +1.4
1,713,517 - Psyr_1523 0.22 +0.3
1,713,529 + Psyr_1523 0.24 +1.0
1,713,529 + Psyr_1523 0.24 -2.1
1,713,529 + Psyr_1523 0.24 -1.0
1,713,530 - Psyr_1523 0.24 -1.6
1,713,530 - Psyr_1523 0.24 -0.5
1,713,537 + Psyr_1523 0.25 +0.6
1,713,715 + Psyr_1523 0.55 +1.4
1,713,715 + Psyr_1523 0.55 +0.6
1,713,715 + Psyr_1523 0.55 +2.3
1,713,716 - Psyr_1523 0.56 +0.8
1,713,716 - Psyr_1523 0.56 +1.4
1,713,716 - Psyr_1523 0.56 +0.5
1,713,716 - Psyr_1523 0.56 +0.3
1,713,716 - Psyr_1523 0.56 +0.4
1,713,716 - Psyr_1523 0.56 +0.9
1,713,725 + Psyr_1523 0.57 -0.4
1,713,726 - Psyr_1523 0.57 +1.1
1,713,799 + Psyr_1523 0.70 -0.0
1,713,799 + Psyr_1523 0.70 +0.6
1,713,799 + Psyr_1523 0.70 -1.0
1,713,799 + Psyr_1523 0.70 +0.3
1,713,800 - Psyr_1523 0.70 +1.0
1,713,800 - Psyr_1523 0.70 -0.3
1,713,844 + Psyr_1523 0.77 +0.3
1,713,856 + Psyr_1523 0.79 -1.7
1,713,856 + Psyr_1523 0.79 -0.4
1,714,127 + Psyr_1524 0.20 -1.5
1,714,156 + Psyr_1524 0.24 +1.1
1,714,156 + Psyr_1524 0.24 +0.0
1,714,156 + Psyr_1524 0.24 -0.1
1,714,156 + Psyr_1524 0.24 +2.4
1,714,156 + Psyr_1524 0.24 -0.8
1,714,156 + Psyr_1524 0.24 +0.3
1,714,156 + Psyr_1524 0.24 -1.7
1,714,156 + Psyr_1524 0.24 +1.9
1,714,157 - Psyr_1524 0.24 -0.4
1,714,157 - Psyr_1524 0.24 +0.1
1,714,157 - Psyr_1524 0.24 -1.9
1,714,305 + Psyr_1524 0.43 -0.6
1,714,305 + Psyr_1524 0.43 +1.7
1,714,305 + Psyr_1524 0.43 -1.1
1,714,305 + Psyr_1524 0.43 +0.9
1,714,305 + Psyr_1524 0.43 +0.2
1,714,305 + Psyr_1524 0.43 +1.4
1,714,305 + Psyr_1524 0.43 -0.6
1,714,306 - Psyr_1524 0.43 +0.6
1,714,306 - Psyr_1524 0.43 +0.1
1,714,306 - Psyr_1524 0.43 -0.9
1,714,306 - Psyr_1524 0.43 -1.5
1,714,306 - Psyr_1524 0.43 -0.3
1,714,306 - Psyr_1524 0.43 +2.0
1,714,307 + Psyr_1524 0.43 +0.6
1,714,307 + Psyr_1524 0.43 -0.7
1,714,432 - Psyr_1524 0.59 +0.4
1,714,443 + Psyr_1524 0.60 -0.7
1,714,443 + Psyr_1524 0.60 +1.7
1,714,443 + Psyr_1524 0.60 -0.6
1,714,444 - Psyr_1524 0.61 +0.6
1,714,444 - Psyr_1524 0.61 +0.2
1,714,444 - Psyr_1524 0.61 +0.4
1,714,472 + Psyr_1524 0.64 -0.2
1,714,472 + Psyr_1524 0.64 -0.3
1,714,536 + Psyr_1524 0.72 -1.9
1,714,536 + Psyr_1524 0.72 -0.0
1,714,536 + Psyr_1524 0.72 -0.1
1,714,536 + Psyr_1524 0.72 +0.3
1,714,536 + Psyr_1524 0.72 -0.6
1,714,536 + Psyr_1524 0.72 +0.9
1,714,536 + Psyr_1524 0.72 -0.4
1,714,537 - Psyr_1524 0.72 -0.7
1,714,537 - Psyr_1524 0.72 +1.2
1,714,537 - Psyr_1524 0.72 -0.3
1,714,537 - Psyr_1524 0.72 +0.7
1,714,537 - Psyr_1524 0.72 -0.4
1,714,537 - Psyr_1524 0.72 +1.4
1,714,537 - Psyr_1524 0.72 -0.8
1,714,538 + Psyr_1524 0.73 -0.1
1,714,538 + Psyr_1524 0.73 -0.1
1,714,539 - Psyr_1524 0.73 -0.6
1,714,767 + +0.6
1,714,767 + +0.1
1,714,769 + -0.1
1,714,769 + +1.1
1,714,770 - +0.4
1,714,784 - -0.4
1,714,809 + -0.1
1,714,809 + -0.4
1,714,809 + +1.2
1,714,809 + -0.0
1,714,810 - -1.6
1,714,811 + -0.4
1,714,811 + +0.5
1,714,812 - -1.6
1,714,825 + +0.1
1,714,870 + -1.7
1,715,248 - +0.2
1,715,420 + Psyr_1525 0.14 +0.2
1,715,511 - Psyr_1525 0.21 -0.1
1,715,607 - Psyr_1525 0.28 +0.4
1,715,629 - Psyr_1525 0.30 -0.4
1,715,662 - Psyr_1525 0.32 -0.8
1,715,672 + Psyr_1525 0.33 +0.5
1,715,673 - Psyr_1525 0.33 +1.4
1,715,673 - Psyr_1525 0.33 -0.2
1,715,673 - Psyr_1525 0.33 -2.5
1,715,676 + Psyr_1525 0.33 +0.4
1,715,676 + Psyr_1525 0.33 -0.9
1,715,684 + Psyr_1525 0.34 -0.1
1,715,684 + Psyr_1525 0.34 -0.5
1,715,685 - Psyr_1525 0.34 -1.3
1,715,685 - Psyr_1525 0.34 -1.2
1,715,685 - Psyr_1525 0.34 -1.1
1,715,685 - Psyr_1525 0.34 -0.4
1,715,685 - Psyr_1525 0.34 +0.1
1,715,690 + Psyr_1525 0.34 -0.3
1,715,691 - Psyr_1525 0.34 +1.4
1,715,696 + Psyr_1525 0.34 -0.6
1,715,698 + Psyr_1525 0.35 +1.4
1,715,702 + Psyr_1525 0.35 +1.1
1,715,702 + Psyr_1525 0.35 +0.7
1,715,702 + Psyr_1525 0.35 +0.0
1,715,702 + Psyr_1525 0.35 +0.7
1,715,702 + Psyr_1525 0.35 -0.5
1,715,702 + Psyr_1525 0.35 +0.3
1,715,702 + Psyr_1525 0.35 +0.9
1,715,702 + Psyr_1525 0.35 +0.5
1,715,702 + Psyr_1525 0.35 -0.2
1,715,703 - Psyr_1525 0.35 +1.4
1,715,703 - Psyr_1525 0.35 -0.2
1,715,703 - Psyr_1525 0.35 +0.3
1,715,703 - Psyr_1525 0.35 -0.1
1,715,705 + Psyr_1525 0.35 -2.1
1,715,705 + Psyr_1525 0.35 +1.1
1,715,705 + Psyr_1525 0.35 +0.4
1,715,705 + Psyr_1525 0.35 +0.3
1,715,705 + Psyr_1525 0.35 +1.4
1,715,705 + Psyr_1525 0.35 -0.1
1,715,705 + Psyr_1525 0.35 +0.4
1,715,705 + Psyr_1525 0.35 +0.7
1,715,706 - Psyr_1525 0.35 -1.6
1,715,706 - Psyr_1525 0.35 -2.5
1,715,706 - Psyr_1525 0.35 +0.9
1,715,706 - Psyr_1525 0.35 +1.4
1,715,706 - Psyr_1525 0.35 -0.9
1,715,706 - Psyr_1525 0.35 +0.0
1,715,706 - Psyr_1525 0.35 -0.6
1,715,748 + Psyr_1525 0.38 -0.1
1,715,749 - Psyr_1525 0.38 -0.1

Or see this region's nucleotide sequence