Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1471

Experiment: KB with Escin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1469 and Psyr_1470 are separated by 296 nucleotidesPsyr_1470 and Psyr_1471 are separated by 19 nucleotidesPsyr_1471 and Psyr_1472 are separated by 73 nucleotides Psyr_1469: Psyr_1469 - hypothetical protein, at 1,656,084 to 1,656,401 _1469 Psyr_1470: Psyr_1470 - hypothetical protein, at 1,656,698 to 1,657,270 _1470 Psyr_1471: Psyr_1471 - hypothetical protein, at 1,657,290 to 1,657,826 _1471 Psyr_1472: Psyr_1472 - hypothetical protein, at 1,657,900 to 1,658,265 _1472 Position (kb) 1657 1658Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1656.296 kb on + strand, within Psyr_1469at 1656.319 kb on + strand, within Psyr_1469at 1656.323 kb on + strand, within Psyr_1469at 1656.323 kb on + strand, within Psyr_1469at 1656.323 kb on + strand, within Psyr_1469at 1656.323 kb on + strand, within Psyr_1469at 1656.323 kb on + strand, within Psyr_1469at 1656.326 kb on + strand, within Psyr_1469at 1656.327 kb on - strand, within Psyr_1469at 1656.383 kb on + strandat 1656.383 kb on + strandat 1656.384 kb on - strandat 1656.387 kb on - strandat 1656.387 kb on - strandat 1656.413 kb on + strandat 1656.414 kb on - strandat 1656.414 kb on - strandat 1656.414 kb on - strandat 1656.415 kb on + strandat 1656.416 kb on - strandat 1656.432 kb on + strandat 1656.458 kb on + strandat 1656.458 kb on + strandat 1656.459 kb on - strandat 1656.459 kb on - strandat 1656.468 kb on - strandat 1656.489 kb on + strandat 1656.489 kb on + strandat 1656.490 kb on - strandat 1656.544 kb on + strandat 1656.545 kb on - strandat 1656.589 kb on + strandat 1656.636 kb on + strandat 1656.640 kb on + strandat 1656.687 kb on + strandat 1656.763 kb on + strand, within Psyr_1470at 1656.776 kb on - strand, within Psyr_1470at 1656.888 kb on + strand, within Psyr_1470at 1656.889 kb on - strand, within Psyr_1470at 1656.894 kb on + strand, within Psyr_1470at 1656.894 kb on + strand, within Psyr_1470at 1656.894 kb on + strand, within Psyr_1470at 1656.894 kb on + strand, within Psyr_1470at 1656.894 kb on + strand, within Psyr_1470at 1656.894 kb on + strand, within Psyr_1470at 1656.894 kb on + strand, within Psyr_1470at 1656.895 kb on - strand, within Psyr_1470at 1656.895 kb on - strand, within Psyr_1470at 1656.895 kb on - strand, within Psyr_1470at 1656.924 kb on + strand, within Psyr_1470at 1656.925 kb on - strand, within Psyr_1470at 1656.925 kb on - strand, within Psyr_1470at 1656.968 kb on - strand, within Psyr_1470at 1656.968 kb on - strand, within Psyr_1470at 1656.981 kb on + strand, within Psyr_1470at 1656.981 kb on + strand, within Psyr_1470at 1656.982 kb on - strand, within Psyr_1470at 1656.982 kb on - strand, within Psyr_1470at 1656.982 kb on - strand, within Psyr_1470at 1657.070 kb on - strand, within Psyr_1470at 1657.110 kb on + strand, within Psyr_1470at 1657.110 kb on + strand, within Psyr_1470at 1657.111 kb on - strand, within Psyr_1470at 1657.111 kb on - strand, within Psyr_1470at 1657.116 kb on + strand, within Psyr_1470at 1657.117 kb on - strand, within Psyr_1470at 1657.151 kb on + strand, within Psyr_1470at 1657.151 kb on + strand, within Psyr_1470at 1657.180 kb on + strand, within Psyr_1470at 1657.242 kb on + strandat 1657.242 kb on + strandat 1657.243 kb on - strandat 1657.243 kb on - strandat 1657.259 kb on - strandat 1657.275 kb on + strandat 1657.275 kb on + strandat 1657.275 kb on + strandat 1657.275 kb on + strandat 1657.275 kb on + strandat 1657.275 kb on + strandat 1657.275 kb on + strandat 1657.275 kb on + strandat 1657.276 kb on - strandat 1657.276 kb on - strandat 1657.276 kb on - strandat 1657.276 kb on - strandat 1657.276 kb on - strandat 1657.306 kb on + strandat 1657.306 kb on + strandat 1657.307 kb on - strandat 1657.329 kb on - strandat 1657.329 kb on - strandat 1657.329 kb on - strandat 1657.391 kb on - strand, within Psyr_1471at 1657.391 kb on - strand, within Psyr_1471at 1657.396 kb on + strand, within Psyr_1471at 1657.396 kb on + strand, within Psyr_1471at 1657.403 kb on + strand, within Psyr_1471at 1657.404 kb on - strand, within Psyr_1471at 1657.429 kb on + strand, within Psyr_1471at 1657.456 kb on + strand, within Psyr_1471at 1657.457 kb on - strand, within Psyr_1471at 1657.576 kb on - strand, within Psyr_1471at 1657.682 kb on + strand, within Psyr_1471at 1657.754 kb on + strand, within Psyr_1471at 1657.754 kb on + strand, within Psyr_1471at 1657.754 kb on + strand, within Psyr_1471at 1657.755 kb on - strand, within Psyr_1471at 1657.755 kb on - strand, within Psyr_1471at 1657.772 kb on + strand, within Psyr_1471at 1657.772 kb on + strand, within Psyr_1471at 1657.772 kb on + strand, within Psyr_1471at 1657.824 kb on + strandat 1657.825 kb on - strandat 1657.882 kb on + strandat 1657.941 kb on + strand, within Psyr_1472at 1657.942 kb on - strand, within Psyr_1472at 1657.942 kb on - strand, within Psyr_1472at 1658.051 kb on + strand, within Psyr_1472at 1658.052 kb on - strand, within Psyr_1472at 1658.190 kb on + strand, within Psyr_1472at 1658.190 kb on + strand, within Psyr_1472at 1658.190 kb on + strand, within Psyr_1472at 1658.190 kb on + strand, within Psyr_1472at 1658.191 kb on - strand, within Psyr_1472at 1658.191 kb on - strand, within Psyr_1472at 1658.191 kb on - strand, within Psyr_1472at 1658.191 kb on - strand, within Psyr_1472at 1658.259 kb on + strandat 1658.259 kb on + strandat 1658.260 kb on - strandat 1658.260 kb on - strandat 1658.341 kb on + strandat 1658.579 kb on - strandat 1658.586 kb on + strandat 1658.586 kb on + strandat 1658.702 kb on + strandat 1658.702 kb on + strandat 1658.702 kb on + strandat 1658.703 kb on - strandat 1658.703 kb on - strandat 1658.727 kb on - strandat 1658.745 kb on - strandat 1658.745 kb on - strandat 1658.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Escin 10 mM
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1,656,296 + Psyr_1469 0.67 -0.4
1,656,319 + Psyr_1469 0.74 -2.1
1,656,323 + Psyr_1469 0.75 +0.7
1,656,323 + Psyr_1469 0.75 +0.0
1,656,323 + Psyr_1469 0.75 +0.7
1,656,323 + Psyr_1469 0.75 -0.0
1,656,323 + Psyr_1469 0.75 -0.9
1,656,326 + Psyr_1469 0.76 +1.2
1,656,327 - Psyr_1469 0.76 +1.0
1,656,383 + +0.3
1,656,383 + +0.3
1,656,384 - -1.7
1,656,387 - +1.7
1,656,387 - -0.0
1,656,413 + -0.2
1,656,414 - +0.2
1,656,414 - +1.0
1,656,414 - +0.5
1,656,415 + +0.6
1,656,416 - +0.0
1,656,432 + -2.0
1,656,458 + -1.1
1,656,458 + -1.0
1,656,459 - -0.1
1,656,459 - +0.7
1,656,468 - +0.4
1,656,489 + -0.1
1,656,489 + +1.0
1,656,490 - -1.5
1,656,544 + +1.2
1,656,545 - +0.7
1,656,589 + -3.3
1,656,636 + +0.1
1,656,640 + +0.0
1,656,687 + +0.2
1,656,763 + Psyr_1470 0.11 -0.9
1,656,776 - Psyr_1470 0.14 +0.3
1,656,888 + Psyr_1470 0.33 -0.7
1,656,889 - Psyr_1470 0.33 +0.1
1,656,894 + Psyr_1470 0.34 +1.1
1,656,894 + Psyr_1470 0.34 +0.3
1,656,894 + Psyr_1470 0.34 -1.3
1,656,894 + Psyr_1470 0.34 +0.5
1,656,894 + Psyr_1470 0.34 -2.5
1,656,894 + Psyr_1470 0.34 +0.1
1,656,894 + Psyr_1470 0.34 +0.7
1,656,895 - Psyr_1470 0.34 -0.8
1,656,895 - Psyr_1470 0.34 +0.3
1,656,895 - Psyr_1470 0.34 +0.6
1,656,924 + Psyr_1470 0.39 +0.4
1,656,925 - Psyr_1470 0.40 -0.0
1,656,925 - Psyr_1470 0.40 -0.5
1,656,968 - Psyr_1470 0.47 +1.5
1,656,968 - Psyr_1470 0.47 +0.2
1,656,981 + Psyr_1470 0.49 +2.0
1,656,981 + Psyr_1470 0.49 -0.1
1,656,982 - Psyr_1470 0.50 +0.2
1,656,982 - Psyr_1470 0.50 +0.8
1,656,982 - Psyr_1470 0.50 -0.2
1,657,070 - Psyr_1470 0.65 -0.1
1,657,110 + Psyr_1470 0.72 -1.5
1,657,110 + Psyr_1470 0.72 -1.3
1,657,111 - Psyr_1470 0.72 -1.1
1,657,111 - Psyr_1470 0.72 -1.1
1,657,116 + Psyr_1470 0.73 -0.3
1,657,117 - Psyr_1470 0.73 +0.6
1,657,151 + Psyr_1470 0.79 -0.5
1,657,151 + Psyr_1470 0.79 -1.5
1,657,180 + Psyr_1470 0.84 -1.5
1,657,242 + -0.9
1,657,242 + +0.7
1,657,243 - -1.4
1,657,243 - +1.9
1,657,259 - -0.1
1,657,275 + +0.0
1,657,275 + -1.0
1,657,275 + -0.6
1,657,275 + -1.4
1,657,275 + -2.0
1,657,275 + -2.0
1,657,275 + +0.7
1,657,275 + -0.5
1,657,276 - -0.0
1,657,276 - -1.0
1,657,276 - -0.2
1,657,276 - +0.2
1,657,276 - -0.2
1,657,306 + -1.7
1,657,306 + +0.2
1,657,307 - -0.2
1,657,329 - -0.3
1,657,329 - -0.1
1,657,329 - -0.9
1,657,391 - Psyr_1471 0.19 -0.9
1,657,391 - Psyr_1471 0.19 -2.1
1,657,396 + Psyr_1471 0.20 -1.6
1,657,396 + Psyr_1471 0.20 -1.7
1,657,403 + Psyr_1471 0.21 -0.2
1,657,404 - Psyr_1471 0.21 +0.1
1,657,429 + Psyr_1471 0.26 +0.4
1,657,456 + Psyr_1471 0.31 -1.8
1,657,457 - Psyr_1471 0.31 +0.1
1,657,576 - Psyr_1471 0.53 +0.0
1,657,682 + Psyr_1471 0.73 +0.1
1,657,754 + Psyr_1471 0.86 -0.4
1,657,754 + Psyr_1471 0.86 -0.5
1,657,754 + Psyr_1471 0.86 +1.2
1,657,755 - Psyr_1471 0.87 -0.9
1,657,755 - Psyr_1471 0.87 -0.3
1,657,772 + Psyr_1471 0.90 -0.3
1,657,772 + Psyr_1471 0.90 +1.0
1,657,772 + Psyr_1471 0.90 -2.0
1,657,824 + +0.2
1,657,825 - -1.3
1,657,882 + -1.7
1,657,941 + Psyr_1472 0.11 -0.8
1,657,942 - Psyr_1472 0.11 +0.4
1,657,942 - Psyr_1472 0.11 +0.2
1,658,051 + Psyr_1472 0.41 -1.6
1,658,052 - Psyr_1472 0.42 -0.2
1,658,190 + Psyr_1472 0.79 -1.3
1,658,190 + Psyr_1472 0.79 +0.9
1,658,190 + Psyr_1472 0.79 -0.9
1,658,190 + Psyr_1472 0.79 -1.3
1,658,191 - Psyr_1472 0.80 -0.3
1,658,191 - Psyr_1472 0.80 -1.0
1,658,191 - Psyr_1472 0.80 +0.1
1,658,191 - Psyr_1472 0.80 +0.9
1,658,259 + +0.2
1,658,259 + -0.1
1,658,260 - -0.4
1,658,260 - +2.8
1,658,341 + -1.1
1,658,579 - +0.0
1,658,586 + -0.1
1,658,586 + -0.1
1,658,702 + +1.5
1,658,702 + +2.5
1,658,702 + +0.1
1,658,703 - -0.1
1,658,703 - -0.4
1,658,727 - +0.3
1,658,745 - +1.0
1,658,745 - -0.9
1,658,769 - -1.3

Or see this region's nucleotide sequence